Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU21126 |
| length | 1279 |
| lncRNA type | antisense_over |
| GC content | 0.41 |
| exon number | 5 |
| gene id | G18813 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 10170951 ~ 10180836 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU21128 | lncRNA | upstream | 5957 | 10159147 ~ 10164994 (+) | True | G18815 |
| TU21167 | lncRNA | upstream | 38198 | 10132550 ~ 10132753 (+) | True | G18851 |
| TU21166 | lncRNA | upstream | 38607 | 10132128 ~ 10132344 (+) | True | G18850 |
| TU21156 | lncRNA | upstream | 50341 | 10120312 ~ 10120610 (+) | True | G18840 |
| TU21155 | lncRNA | upstream | 51695 | 10119051 ~ 10119256 (+) | True | G18839 |
| TU21180 | lncRNA | downstream | 21665 | 10202501 ~ 10209817 (+) | True | G18864 |
| TU21186 | lncRNA | downstream | 30393 | 10211229 ~ 10211446 (+) | True | G18870 |
| TU21191 | lncRNA | downstream | 43043 | 10223879 ~ 10260714 (+) | False | G18873 |
| TU21212 | lncRNA | downstream | 44090 | 10224926 ~ 10225528 (+) | True | G18890 |
| TU21228 | lncRNA | downstream | 71272 | 10252108 ~ 10252654 (+) | True | G18902 |
| CI01000001_10150798_10152858.mRNA | mRNA | upstream | 18013 | 10150373 ~ 10152938 (+) | True | CI01000001_10150798_10152858 |
| CI01000001_10141190_10146911.mRNA | mRNA | upstream | 22893 | 10141190 ~ 10148058 (+) | True | CI01000001_10141190_10146911 |
| CI01000001_10093069_10104108.mRNA | mRNA | upstream | 65252 | 10092902 ~ 10105699 (+) | True | CI01000001_10093069_10104108 |
| CI01000001_10072627_10081119.mRNA | mRNA | upstream | 89772 | 10072627 ~ 10081179 (+) | True | CI01000001_10072627_10081119 |
| CI01000001_09946111_09958162.mRNA | mRNA | upstream | 212705 | 9944120 ~ 9958246 (+) | True | CI01000001_09946111_09958162 |
| CI01000001_10321783_10325266.mRNA | mRNA | downstream | 140811 | 10321647 ~ 10325305 (+) | True | CI01000001_10321783_10325266 |
| CI01000001_10328133_10329110.mRNA | mRNA | downstream | 147204 | 10328040 ~ 10329110 (+) | True | CI01000001_10328133_10329110 |
| CI01000001_10395420_10396473.mRNA | mRNA | downstream | 214015 | 10394851 ~ 10396473 (+) | False | CI01000001_10395420_10396473 |
| CI01000001_10420931_10426716.mRNA | mRNA | downstream | 239482 | 10420318 ~ 10427147 (+) | True | CI01000001_10420931_10426716 |
| CI01000001_10525795_10530510.mRNA | mRNA | downstream | 342426 | 10523262 ~ 10530543 (+) | True | CI01000001_10525795_10530510 |
| TU19459 | other | upstream | 732888 | 9418328 ~ 9438063 (+) | True | G17334 |
| TU19479 | other | upstream | 930274 | 9234463 ~ 9240677 (+) | True | G17354 |
| TU19478 | other | upstream | 942092 | 9216022 ~ 9228859 (+) | True | G17353 |
| TU19348 | other | upstream | 2138468 | 8032124 ~ 8032483 (+) | True | G17234 |
| TU19034 | other | upstream | 2630491 | 7532764 ~ 7540460 (+) | True | CI01000001_07531945_07539781 |
| TU21219 | other | downstream | 59064 | 10239900 ~ 10241492 (+) | True | G18896 |
| TU21190 | other | downstream | 76276 | 10257112 ~ 10260714 (+) | True | G18873 |
| TU21188 | other | downstream | 90310 | 10271146 ~ 10281369 (+) | True | G18872 |
| TU21193 | other | downstream | 212721 | 10393557 ~ 10395953 (+) | True | G18875 |
| TU21268 | other | downstream | 294148 | 10474984 ~ 10476389 (+) | True | G18937 |
