RNA id: TU21180


Basic Information

Item Value
RNA id TU21180
length 212
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G18864
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10202501 ~ 10209817 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTGAGAACGAAGGCTGACACATCTATATACCAAACTCACGCATGCAGACATCAAGAGTCGTTCGCTTAAAAACCGACACCTGCATGCGGAGCGGAGAATGCAGAAGAGGCTGTTTCACATTAAAGGCAACATGTGAACAATAACTTTTGGGCTGCAACTCTCTGTGTGTCACTTGAGCTCCTTCTGTCTATTCAAACCTCGACTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21126 lncRNA upstream 21665 10170951 ~ 10180836 (+) True G18813
TU21128 lncRNA upstream 37507 10159147 ~ 10164994 (+) True G18815
TU21167 lncRNA upstream 69748 10132550 ~ 10132753 (+) True G18851
TU21166 lncRNA upstream 70157 10132128 ~ 10132344 (+) True G18850
TU21156 lncRNA upstream 81891 10120312 ~ 10120610 (+) True G18840
TU21186 lncRNA downstream 1412 10211229 ~ 10211446 (+) True G18870
TU21191 lncRNA downstream 14062 10223879 ~ 10260714 (+) False G18873
TU21212 lncRNA downstream 15109 10224926 ~ 10225528 (+) True G18890
TU21228 lncRNA downstream 42291 10252108 ~ 10252654 (+) True G18902
TU21192 lncRNA downstream 74946 10284763 ~ 10335916 (+) True G18874
CI01000001_10150798_10152858.mRNA mRNA upstream 49563 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 54443 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 96802 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 121322 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 244255 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_10321783_10325266.mRNA mRNA downstream 111830 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 118223 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 185034 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 210501 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 313445 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
TU19459 other upstream 764438 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 961824 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 973642 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2170018 8032124 ~ 8032483 (+) True G17234
TU19034 other upstream 2662041 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU21219 other downstream 30083 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 47295 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 61329 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 183740 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 265167 10474984 ~ 10476389 (+) True G18937

Expression Profile