RNA id: TU21186


Basic Information

Item Value
RNA id TU21186
length 218
lncRNA type intronic
GC content 0.48
exon number 1
gene id G18870
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10211229 ~ 10211446 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACACAAACCATTCTCCCCCTATAAAAATAATGAACTGATACTTATGTGACATCATTAATAGGAAGTGACATCATAGAAGTCTTCTAAACAACATTGTGAACAGGCACCTTCTTTAATAATTATAACTAAATTATGTTGTGAAATTGTGTTTGTCAAGCTTAACGACTCAACCCCGTTACATCAATTAAAGATAGAAAACTATTACTTGTGAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21180 lncRNA upstream 1412 10202501 ~ 10209817 (+) True G18864
TU21126 lncRNA upstream 30393 10170951 ~ 10180836 (+) True G18813
TU21128 lncRNA upstream 46235 10159147 ~ 10164994 (+) True G18815
TU21167 lncRNA upstream 78476 10132550 ~ 10132753 (+) True G18851
TU21166 lncRNA upstream 78885 10132128 ~ 10132344 (+) True G18850
TU21191 lncRNA downstream 12433 10223879 ~ 10260714 (+) False G18873
TU21212 lncRNA downstream 13480 10224926 ~ 10225528 (+) True G18890
TU21228 lncRNA downstream 40662 10252108 ~ 10252654 (+) True G18902
TU21192 lncRNA downstream 73317 10284763 ~ 10335916 (+) True G18874
TU21206 lncRNA downstream 93485 10304931 ~ 10320075 (+) True G18884
CI01000001_10150798_10152858.mRNA mRNA upstream 58291 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 63171 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 105530 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 130050 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 252983 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_10321783_10325266.mRNA mRNA downstream 110201 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 116594 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 183405 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 208872 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 311816 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
TU19459 other upstream 773166 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 970552 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 982370 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2178746 8032124 ~ 8032483 (+) True G17234
TU19034 other upstream 2670769 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU21219 other downstream 28454 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 45666 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 59700 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 182111 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 263538 10474984 ~ 10476389 (+) True G18937

Expression Profile