RNA id: TU21190


Basic Information

Item Value
RNA id TU21190
length 3564
RNA type TUCP
GC content 0.44
exon number 2
gene id G18873
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10223879 ~ 10260714 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCCATTCTATATCATTGTTATAATTTATTATTAGATTAATAGCAGTAATTCTTTAAAATTCTGTATTTACAAAACCCACAACAAAGCATGCCATTTAAAAGAAAATAATATATTACAATGCTTATAGTTTTCCTCAAAAAGTTCATTCTTTTCAGCAATTGTGCCATGTACATCATAGCCCCTCCTGTACATTGAATGATACATTAACTTGTCATACAGTGAGTAAGAGTGATTTTTCATTTCACATCTGAACTAAAATGGGAGTTGGGGGAAACTACATGGTAGTCTAAGTGTTTCACCAGGCTTCATTTGGTTTAAGTCCACAGCACCCACGCTGATTAGAGATCTCAGGCAGTAAGCAGACCTACGGGTCTGAGAAGTAGAGGAAGTGGGTTTGTAAACTGGTGCGCTCTCCAGCACTCCGGCTCTGGTGGCGTACGTCTACTGACCCAGCAGTTTGAAATGTCCTATGATCTTTCATGTTGTCTGTGGTCCACCGTAACACCTTGCACTGGGCTAGCCCACACCAGAATAAGCATTCGTTCCTACCGAACAGAAGAGGTAATGAAACGACACTCAAAAAACTGTAAACGGAAGAATTACTGTTGCAAATCAAATCAATTTCCATTGCACCCAGAGCAAGAAGGGATGGCAGTTTGCTCAAGAGGTAGCAACATAGGTAAAAAAGCCAATTTGTGGAATCACCATCATAAACCGCATGCGATCAGACAACACAAGTACTCATCACTTCATTCTAAAACTGCCGCCTGCTTTGTTTTCCTGCTGTGTAAGGCCAGTTTACATGTATAATCCGAGCTATACCAAACACTCATGAGTCACTTTTTCATTCAACAAGGAGAAAGCTATTAACATCTACAGGATGCATTAAAATGGCTACTCGAGTGCTTTCCTCAACATCTTTAAGACAAAACAAGATGCTAACACAACTGACAACCCCTTTAAATGGTAAACATGAGGATGTGCTGACATGAAGACAAGTACCTCCAGGAAAATCAAAGGGATTGCCTCCCACCGAGGCCTGACAAAGCATTGTAAGGGTTAAAATGGCATGTACCTTAGTGGCTGTACCCTACTGGAGCCTCAGCTGCACATTGAGGGGCAGTTGAATCATATTGCTGGTGCAAAAAAGCAAATCAAGGTTTATGAACCCAAGATTTGATAAGAGTGAAACTGTTTCTCCAAATTTTCATCCCAACTTCTCCTCAGGTCCAGGGCAGTGAAACACCTCTACGGGTGGACGAATGTGCAGTTGCCACACTGTACATCCAAACGAAGGAATAGCTTTGATCGGCCACCGTGGAATACGCACATGACGCATGGTGTGAGAATCGGTTAATCAGGAAGCAAGCTTTACGAGGGGTAAGTATAAACATACTTGTCATAGCCAGTAGTTAAATATGTTGCTATTGACCAATCATTTCCCAGCTATATCTATTTAATTTGATTACTAGTGGACAGCGTCGAAAGTATGGTCAAGCCACTGGTGTGGATTGAGTAGCAGTGTCAAGTGGACTATGATTATACATGCATGATTCCTGATCAAAACATGCCACCATGCAAGTCATTTCTATGCATTGAACGAGCACAATTAATTATTTATTTACCAGGAACTCGGTCTGAGTAAGTCCCTTTCAGCCCAAGTCAAAACCCTGATAATCCCCAACCCAATATCGATGTGAAAGCCCATGTATAAAATGTCTTTTTTTTTTTCTTCCTGTAAGTATAACAAAGAGATGATGACGAGATGAATGACATGGGCTGAACTTTCCCCCCTACTTTTTGTGGGTCAAATAAGGTGAGATATTCATCACAACAACTGAAAACCCTTGCATATTGTTCTGTTTTGTTTTGTTTTGTTTTTTTTCTTCTTTTTTTTTCTGCGGACACTCCACGTGATTGAGTTAACATCATTATTACTGGTTCTCCTATGGTTAAAATACAACGTCCCAGAATCCTCCAGGGATGAGCGGGAGGTTTCCGTCGGATTTCGGCAGTGTAGTGTTTGAAAGGGATGTCCGTAGAGGAGGAATGCTGAACTCCACGCATGGTGGTGCAAAGGAATCCATGTAATGAGTTTGCTTTGTACTGCTTCGTCCTTTGGCAGGTGGTCCCTATCGAAGATGTCTGCCATAGGTCATTATTTTGTTTCTCCTTTTAAGTGCCTTTTGGCTGCAGTTGGAACAGTAAAATCTTGGTCACTGAGCACAAATGTAAGACAATAAGCTCATAGGTTGGTTTGGTCATCATTAAATCTGTAAAAACCAAGCTGCTTTCCTTTTGCACTGGTGCATTTGTTGTCTGTAAACAACCTTTTTCTCCAAAGATTTCTGTATTTTTTGTTGCAAATGATTTTCTATACATTTGTTGGAATAGATAGTTTCAGTCTCGACTCGGGAGTTCGTCTCCATCGTTCCTAACACTTAGATTCCTTGACATCTTTTTGGTTTTTGCCCTTTTTGCCCTTGCTGTCACTCTCCTCCAACTTCTCCTTCTCAGGTTTGGTCACGCTGTCGTAGGACGGCAGCGAGGCAGTAGAAGGCGTGCCCTCTTTCTTTTCCTGATTGGTCCCGCCATTCTCCAGCCTGCTGCTGCTGAGCAAGCGCTTGCAGATGAAGCCTCTCCGAATAAGATGGGCACGGTAAGCACGCTGGATGACTGAGGCAGACATATGCTCCTGCTTGCGCCGCAGAGTGGTGGTGATGGGCTCAAAAGACACTTTGGAAGGATTGGCAGCAATGAATCTCTCCTCCATCTGTTGCCGCATCATGTCCAGGTCGCCGCTATCACCCAGCACGCGTTTGGTGAAGGCAAACAAGATGTCTAGGCAGTGAATGCGGTCGCCGCTCACCATGGGCAGGTCCATGGCAATCAGCTCTATAGTGTTGGGCTTGGGAACGCGCAGCGGGTGCTCCAGAGTGTCAGCGAAGTCACCCAGCTTGGCAAAGGTGATGAACTGGGAAGCAGTGGGGTCAAACTTTTCCCAGATCTCGTAGAAGGACTCAAAGTCGTCCTCACAAAGTGGGTCAGCGCTCTCCTCCGTGGCGACGCTGAAGTTCTCCAGAATGATGGCGATGTACATGTTTACCACGATGAGAAATGAGACAATGATGTACATGACGAAGAAGAAGATGCCCACCGAAGGGTTTCCGCAGTTACCTTTCACCGTGGTACCTGGATTCTCCTTGTCCGGATCGCAATCTGGTGGGTAATTGAGAATGGGAGCGAGAAGGCCGTCCCATCCCGCTGAGGTGGTTATCATGAACAGGCAAATCATACTATTCCCAAATGTTTCAAAGTTATACATGTCATCTATGCCAGCCTCCCGCTTCACATAGGCGAAGTTTGACATGCCGAAGATAGAAAAGATGAACATGACCAAGAACAGCAGAAGGCCGATATTGAACAGGGCCGGCAGTGACATCATCAGGGCAAACAGTAAAGTCCGAATGCCCTTTGCTCCTTTGATCAGACGCAAGATACGTCCAATTCGAGCCAGACGGATTACCCTGAACAACGTTGGTGACACAAAGTACTTCTCAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21228 lncRNA upstream 4458 10252108 ~ 10252654 (+) True G18902
TU21212 lncRNA upstream 31584 10224926 ~ 10225528 (+) True G18890
TU21186 lncRNA upstream 45666 10211229 ~ 10211446 (+) True G18870
TU21180 lncRNA upstream 47295 10202501 ~ 10209817 (+) True G18864
TU21126 lncRNA upstream 76276 10170951 ~ 10180836 (+) True G18813
TU21192 lncRNA downstream 24049 10284763 ~ 10335916 (+) True G18874
TU21206 lncRNA downstream 44217 10304931 ~ 10320075 (+) True G18884
TU21202 lncRNA downstream 76173 10336887 ~ 10338149 (+) True G18880
TU21200 lncRNA downstream 79323 10340037 ~ 10344121 (+) True G18878
TU21194 lncRNA downstream 129974 10390688 ~ 10391598 (+) True G18876
CI01000001_10150798_10152858.mRNA mRNA upstream 104174 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 109054 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 151413 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 175933 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 298866 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_10321783_10325266.mRNA mRNA downstream 60933 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 67326 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 134137 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 159604 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 262548 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
TU21219 other upstream 15620 10239900 ~ 10241492 (+) True G18896
TU19459 other upstream 819049 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 1016435 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 1028253 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2224629 8032124 ~ 8032483 (+) True G17234
TU21188 other downstream 10432 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 132843 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 214270 10474984 ~ 10476389 (+) True G18937
TU21318 other downstream 277758 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21319 other downstream 277758 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667

Expression Profile