RNA id: TU21212


Basic Information

Item Value
RNA id TU21212
length 413
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G18890
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10224926 ~ 10225528 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCAAAAACACGCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCGCGCTTCGGTCGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTTGTGAAGCAGTCCGGCGTAAAATGACGGCATGTCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCCCGCCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTCTGAGGTTAGTGATGTCACCAACCCAGGAAGAAACTTGTTGTAGTCCCTACCAGCCATTTGTTGTAGTCCTTAAAAAGCGATTTCTGTAAAAGAAAATATCTCCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21186 lncRNA upstream 13480 10211229 ~ 10211446 (+) True G18870
TU21180 lncRNA upstream 15109 10202501 ~ 10209817 (+) True G18864
TU21126 lncRNA upstream 44090 10170951 ~ 10180836 (+) True G18813
TU21128 lncRNA upstream 59932 10159147 ~ 10164994 (+) True G18815
TU21167 lncRNA upstream 92173 10132550 ~ 10132753 (+) True G18851
TU21228 lncRNA downstream 26580 10252108 ~ 10252654 (+) True G18902
TU21192 lncRNA downstream 59235 10284763 ~ 10335916 (+) True G18874
TU21206 lncRNA downstream 79403 10304931 ~ 10320075 (+) True G18884
TU21202 lncRNA downstream 111359 10336887 ~ 10338149 (+) True G18880
TU21200 lncRNA downstream 114509 10340037 ~ 10344121 (+) True G18878
CI01000001_10150798_10152858.mRNA mRNA upstream 71988 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 76868 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 119227 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 143747 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 266680 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_10321783_10325266.mRNA mRNA downstream 96119 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 102512 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 169323 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 194790 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 297734 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
TU19459 other upstream 786863 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 984249 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 996067 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2192443 8032124 ~ 8032483 (+) True G17234
TU19034 other upstream 2684466 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU21219 other downstream 14372 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 31584 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 45618 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 168029 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 249456 10474984 ~ 10476389 (+) True G18937

Expression Profile