RNA id: TU21219



Basic Information


Item Value
RNA id TU21219
length 619
RNA type TUCP
GC content 0.45
exon number 3
gene id G18896
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10239900 ~ 10241492 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGAAATCGAAGCGGGAGAAGAACATAGCCCAGCGTGCTTGTCGGGGATTCAGTCTTTTCGCAGCTCTCAGGTATTCCAAGTTCTTATGGTCAGTGAGGACCAGGAAGGGGTGTTTGGCTCCCTCCAACCAATGCCTCCATTCTTCCAGAGCCAACTTGACCGCCAGGAGCTCGCGGTCACCGATGTTGTAGTTGACCTCCGCCGGGTTGAGCTTGCGGGAGAAGAAGGCGCATGGGTGGAGCCTACTTGGTGTCCCCTGCTGCTGAGAGCGGACCGCTCCCACTCCTGTGGTGGAGGCGTCCACCTCTACTACGAAGGGCAGGTCAGGATTGGGGTGGACGAGGAGGGGAGCGGTGGTGAAGGCTTCCTTGAGGGCCTCGAAGGCGTTGGTGGCAGTTGGAGTCCAGGACAGAGACTTGGGCTGGTTCCGGAGCAGGTTGGTGAGTGGATGAACGATGGAGCTGTAGTTCTTGATGAAACGACGGTAGAAGTTTGCGAAGCCAAGGAAGCGTTGGAGTTCTTTTATGGTAGATGGAGTGGGCCAGGACTTGATAGCTTCCACCTTCCCCTCGCGTATCCGGATGAGGTTATACGCGCTGCGGAGGTCCAGCTTGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21212 lncRNA upstream 14372 10224926 ~ 10225528 (+) True G18890
TU21186 lncRNA upstream 28454 10211229 ~ 10211446 (+) True G18870
TU21180 lncRNA upstream 30083 10202501 ~ 10209817 (+) True G18864
TU21126 lncRNA upstream 59064 10170951 ~ 10180836 (+) True G18813
TU21128 lncRNA upstream 74906 10159147 ~ 10164994 (+) True G18815
TU21228 lncRNA downstream 10616 10252108 ~ 10252654 (+) True G18902
TU21192 lncRNA downstream 43271 10284763 ~ 10335916 (+) True G18874
TU21206 lncRNA downstream 63439 10304931 ~ 10320075 (+) True G18884
TU21202 lncRNA downstream 95395 10336887 ~ 10338149 (+) True G18880
TU21200 lncRNA downstream 98545 10340037 ~ 10344121 (+) True G18878
CI01000001_10150798_10152858.mRNA mRNA upstream 86962 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 91842 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 134201 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 158721 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 281654 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_10321783_10325266.mRNA mRNA downstream 80155 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 86548 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 153359 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 178826 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 281770 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
TU19459 other upstream 801837 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 999223 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 1011041 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 2207417 8032124 ~ 8032483 (+) True G17234
TU19037 other upstream 2699314 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU21190 other downstream 15620 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 29654 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 152065 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 233492 10474984 ~ 10476389 (+) True G18937
TU21318 other downstream 296980 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667

Expression Profile