RNA id: TU21206



Basic Information


Item Value
RNA id TU21206
length 754
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G18884
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10304931 ~ 10320075 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TACTCTACTTGTTTGGACCACTCGGGAGGGTTACTAAAAGTCATGAACACACAGTTGGTCAAAATCGTACACATAATGAACATGCTGAATACTGAATGTATCAAAATTTTAATCGCTATTCGCCTGGCAAGATTAAAAGGGCTTATCATGTACAAGGCAGGTGTGGCACTAAAGCGGAAGATTGTTTTCCCTCTATTTAGGACTATAAATGTTTTCTTATTCACGTAGAAGGGATCTAAATCCTCCAGTGGCGTTGCCACCATGCCAGGAGGGATGTCCCCGTAGATGAAGGGCAGACTCTTGCCCGCCTCCAGGTCACCGTTAGGCTTGGGCTTGTTCTCGTCGTCATCGTCGTGGTAGCTGCTGTCTGGCTTAGGAGGCGGCTTGGCTTTCTCCTCAGCAATGCGCTTCTCGATTTCACACAGAGATTCCCTGGTAAAGTATTTGAAGCTGTCAGGTCCTGGCGGTGCAAGAAGGTGTGCAGCCATGTTTTCATCCTGCAGCAACTTCTTCTCCTGTTATGTACCCTCCACGGCAGCCAGTTTATGATTACGTTAGCGGGTATCCAAAAAATCCTCACTGCACTGCAGATGTCGAATAAATTCGGAAGAAATTGCGGATGTCGCCATATTGTTGCTGCTACCCTCCTTCAGTGTGCACCGTTACCCTGCATAATTGATGACTCCCAGCGAAATGTAAGGGAGTGTCGGCCAATAGGTAGCACCAGCTCCACAATAAGCGGCGTTGATTTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21191 lncRNA upstream 44217 10223879 ~ 10260714 (+) False G18873
TU21228 lncRNA upstream 52277 10252108 ~ 10252654 (+) True G18902
TU21212 lncRNA upstream 79403 10224926 ~ 10225528 (+) True G18890
TU21186 lncRNA upstream 93485 10211229 ~ 10211446 (+) True G18870
TU21180 lncRNA upstream 95114 10202501 ~ 10209817 (+) True G18864
TU21202 lncRNA downstream 16812 10336887 ~ 10338149 (+) True G18880
TU21200 lncRNA downstream 19962 10340037 ~ 10344121 (+) True G18878
TU21194 lncRNA downstream 70613 10390688 ~ 10391598 (+) True G18876
TU21204 lncRNA downstream 82155 10402230 ~ 10403910 (+) True G18882
TU21284 lncRNA downstream 111882 10431957 ~ 10432409 (+) False G18951
CI01000001_10150798_10152858.mRNA mRNA upstream 151993 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 156873 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 199232 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10072627_10081119.mRNA mRNA upstream 223752 10072627 ~ 10081179 (+) True CI01000001_10072627_10081119
CI01000001_09946111_09958162.mRNA mRNA upstream 346685 9944120 ~ 9958246 (+) True CI01000001_09946111_09958162
CI01000001_10321783_10325266.mRNA mRNA downstream 1572 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10328133_10329110.mRNA mRNA downstream 7965 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10395420_10396473.mRNA mRNA downstream 74776 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 100243 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 203187 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
TU21188 other upstream 23562 10271146 ~ 10281369 (+) True G18872
TU21190 other upstream 44217 10257112 ~ 10260714 (+) True G18873
TU21219 other upstream 63439 10239900 ~ 10241492 (+) True G18896
TU19459 other upstream 866868 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 1064254 9234463 ~ 9240677 (+) True G17354
TU21193 other downstream 73482 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 154909 10474984 ~ 10476389 (+) True G18937
TU21318 other downstream 218397 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21319 other downstream 218397 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21382 other downstream 530849 10850924 ~ 10853983 (+) True G19039

Expression Profile