Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU21200 |
| length | 985 |
| lncRNA type | antisense_over |
| GC content | 0.50 |
| exon number | 8 |
| gene id | G18878 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 10340037 ~ 10344121 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU21202 | lncRNA | upstream | 1888 | 10336887 ~ 10338149 (+) | True | G18880 |
| TU21192 | lncRNA | upstream | 4121 | 10284763 ~ 10335916 (+) | True | G18874 |
| TU21206 | lncRNA | upstream | 19962 | 10304931 ~ 10320075 (+) | True | G18884 |
| TU21191 | lncRNA | upstream | 79323 | 10223879 ~ 10260714 (+) | False | G18873 |
| TU21228 | lncRNA | upstream | 87383 | 10252108 ~ 10252654 (+) | True | G18902 |
| TU21194 | lncRNA | downstream | 46567 | 10390688 ~ 10391598 (+) | True | G18876 |
| TU21204 | lncRNA | downstream | 58109 | 10402230 ~ 10403910 (+) | True | G18882 |
| TU21284 | lncRNA | downstream | 87836 | 10431957 ~ 10432409 (+) | False | G18951 |
| TU21285 | lncRNA | downstream | 87974 | 10432095 ~ 10433760 (+) | True | G18951 |
| TU21301 | lncRNA | downstream | 90098 | 10434219 ~ 10434542 (+) | True | G18967 |
| CI01000001_10328133_10329110.mRNA | mRNA | upstream | 10927 | 10328040 ~ 10329110 (+) | True | CI01000001_10328133_10329110 |
| CI01000001_10321783_10325266.mRNA | mRNA | upstream | 14732 | 10321647 ~ 10325305 (+) | True | CI01000001_10321783_10325266 |
| CI01000001_10150798_10152858.mRNA | mRNA | upstream | 187099 | 10150373 ~ 10152938 (+) | True | CI01000001_10150798_10152858 |
| CI01000001_10141190_10146911.mRNA | mRNA | upstream | 191979 | 10141190 ~ 10148058 (+) | True | CI01000001_10141190_10146911 |
| CI01000001_10093069_10104108.mRNA | mRNA | upstream | 234338 | 10092902 ~ 10105699 (+) | True | CI01000001_10093069_10104108 |
| CI01000001_10395420_10396473.mRNA | mRNA | downstream | 50730 | 10394851 ~ 10396473 (+) | False | CI01000001_10395420_10396473 |
| CI01000001_10420931_10426716.mRNA | mRNA | downstream | 76197 | 10420318 ~ 10427147 (+) | True | CI01000001_10420931_10426716 |
| CI01000001_10525795_10530510.mRNA | mRNA | downstream | 179141 | 10523262 ~ 10530543 (+) | True | CI01000001_10525795_10530510 |
| CI01000001_10538498_10539667.mRNA | mRNA | downstream | 194267 | 10538388 ~ 10539702 (+) | False | CI01000001_10538498_10539667 |
| CI01000001_10573770_10582123.mRNA | mRNA | downstream | 229649 | 10573770 ~ 10582238 (+) | True | CI01000001_10573770_10582123 |
| TU21188 | other | upstream | 58668 | 10271146 ~ 10281369 (+) | True | G18872 |
| TU21190 | other | upstream | 79323 | 10257112 ~ 10260714 (+) | True | G18873 |
| TU21219 | other | upstream | 98545 | 10239900 ~ 10241492 (+) | True | G18896 |
| TU19459 | other | upstream | 901974 | 9418328 ~ 9438063 (+) | True | G17334 |
| TU19479 | other | upstream | 1099360 | 9234463 ~ 9240677 (+) | True | G17354 |
| TU21193 | other | downstream | 49436 | 10393557 ~ 10395953 (+) | True | G18875 |
| TU21268 | other | downstream | 130863 | 10474984 ~ 10476389 (+) | True | G18937 |
| TU21318 | other | downstream | 194351 | 10538472 ~ 10539750 (+) | False | CI01000001_10538498_10539667 |
| TU21319 | other | downstream | 194351 | 10538472 ~ 10539846 (+) | True | CI01000001_10538498_10539667 |
| TU21382 | other | downstream | 506803 | 10850924 ~ 10853983 (+) | True | G19039 |
