RNA id: TU21194


Basic Information

Item Value
RNA id TU21194
length 384
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G18876
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10390688 ~ 10391598 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTAACAGGACTTCAAGCAGCAAAAAAGTGATGCCCCTTTAAAAACGTCTACAATATGAAAACAAAGATCTTCGAGAACAGCAACGATAAATCAACATTCAAAGCGATATGAACTCGATCTGCCTCACTGACAGTGTCTGTGCTGAGACAGCTCGAGCTCCAACTCCGCCAACTGCTCTCTAACCTCTTTCGGTAGAGCTGCCAAATCCACACCGCGGTCTGCCATCGCTGCGAGAATACGCTGAAGTTGTTTTAAGTGTGAAGAAATGCGCTTCGAAAGCCAAAAATCCTCCCGTCAAGACAGAAGACATGAATTAAAAGGTGAGTAACAATCCATCCGGACAACTACTCCTTCCGCCATGCTGTGAGAACTCACCAACTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21200 lncRNA upstream 46567 10340037 ~ 10344121 (+) True G18878
TU21202 lncRNA upstream 52539 10336887 ~ 10338149 (+) True G18880
TU21192 lncRNA upstream 54772 10284763 ~ 10335916 (+) True G18874
TU21206 lncRNA upstream 70613 10304931 ~ 10320075 (+) True G18884
TU21228 lncRNA upstream 138034 10252108 ~ 10252654 (+) True G18902
TU21204 lncRNA downstream 10632 10402230 ~ 10403910 (+) True G18882
TU21284 lncRNA downstream 40359 10431957 ~ 10432409 (+) False G18951
TU21285 lncRNA downstream 40497 10432095 ~ 10433760 (+) True G18951
TU21301 lncRNA downstream 42621 10434219 ~ 10434542 (+) True G18967
TU21302 lncRNA downstream 44172 10435770 ~ 10435995 (+) True G18968
CI01000001_10328133_10329110.mRNA mRNA upstream 61578 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10321783_10325266.mRNA mRNA upstream 65383 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10150798_10152858.mRNA mRNA upstream 237750 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10141190_10146911.mRNA mRNA upstream 242630 10141190 ~ 10148058 (+) True CI01000001_10141190_10146911
CI01000001_10093069_10104108.mRNA mRNA upstream 284989 10092902 ~ 10105699 (+) True CI01000001_10093069_10104108
CI01000001_10395420_10396473.mRNA mRNA downstream 3253 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10420931_10426716.mRNA mRNA downstream 28720 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10525795_10530510.mRNA mRNA downstream 131664 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10538498_10539667.mRNA mRNA downstream 146790 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10573770_10582123.mRNA mRNA downstream 182172 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
TU21188 other upstream 109319 10271146 ~ 10281369 (+) True G18872
TU21190 other upstream 129974 10257112 ~ 10260714 (+) True G18873
TU21219 other upstream 149196 10239900 ~ 10241492 (+) True G18896
TU19459 other upstream 952625 9418328 ~ 9438063 (+) True G17334
TU19479 other upstream 1150011 9234463 ~ 9240677 (+) True G17354
TU21193 other downstream 1959 10393557 ~ 10395953 (+) True G18875
TU21268 other downstream 83386 10474984 ~ 10476389 (+) True G18937
TU21318 other downstream 146874 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21319 other downstream 146874 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21382 other downstream 459326 10850924 ~ 10853983 (+) True G19039

Expression Profile