Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU21204 |
| length | 1553 |
| lncRNA type | antisense_over |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G18882 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 10402230 ~ 10403910 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU21194 | lncRNA | upstream | 10632 | 10390688 ~ 10391598 (+) | True | G18876 |
| TU21200 | lncRNA | upstream | 58109 | 10340037 ~ 10344121 (+) | True | G18878 |
| TU21202 | lncRNA | upstream | 64081 | 10336887 ~ 10338149 (+) | True | G18880 |
| TU21192 | lncRNA | upstream | 66314 | 10284763 ~ 10335916 (+) | True | G18874 |
| TU21206 | lncRNA | upstream | 82155 | 10304931 ~ 10320075 (+) | True | G18884 |
| TU21284 | lncRNA | downstream | 28047 | 10431957 ~ 10432409 (+) | False | G18951 |
| TU21285 | lncRNA | downstream | 28185 | 10432095 ~ 10433760 (+) | True | G18951 |
| TU21301 | lncRNA | downstream | 30309 | 10434219 ~ 10434542 (+) | True | G18967 |
| TU21302 | lncRNA | downstream | 31860 | 10435770 ~ 10435995 (+) | True | G18968 |
| TU21303 | lncRNA | downstream | 32743 | 10436653 ~ 10436873 (+) | True | G18969 |
| CI01000001_10395420_10396473.mRNA | mRNA | upstream | 5757 | 10394851 ~ 10396473 (+) | False | CI01000001_10395420_10396473 |
| CI01000001_10328133_10329110.mRNA | mRNA | upstream | 73120 | 10328040 ~ 10329110 (+) | True | CI01000001_10328133_10329110 |
| CI01000001_10321783_10325266.mRNA | mRNA | upstream | 76925 | 10321647 ~ 10325305 (+) | True | CI01000001_10321783_10325266 |
| CI01000001_10150798_10152858.mRNA | mRNA | upstream | 249292 | 10150373 ~ 10152938 (+) | True | CI01000001_10150798_10152858 |
| CI01000001_10141190_10146911.mRNA | mRNA | upstream | 254172 | 10141190 ~ 10148058 (+) | True | CI01000001_10141190_10146911 |
| CI01000001_10420931_10426716.mRNA | mRNA | downstream | 16408 | 10420318 ~ 10427147 (+) | True | CI01000001_10420931_10426716 |
| CI01000001_10525795_10530510.mRNA | mRNA | downstream | 119352 | 10523262 ~ 10530543 (+) | True | CI01000001_10525795_10530510 |
| CI01000001_10538498_10539667.mRNA | mRNA | downstream | 134478 | 10538388 ~ 10539702 (+) | False | CI01000001_10538498_10539667 |
| CI01000001_10573770_10582123.mRNA | mRNA | downstream | 169860 | 10573770 ~ 10582238 (+) | True | CI01000001_10573770_10582123 |
| CI01000001_10582439_10582802.mRNA | mRNA | downstream | 178468 | 10582378 ~ 10582821 (+) | True | CI01000001_10582439_10582802 |
| TU21193 | other | upstream | 5525 | 10393557 ~ 10395953 (+) | True | G18875 |
| TU21188 | other | upstream | 120861 | 10271146 ~ 10281369 (+) | True | G18872 |
| TU21190 | other | upstream | 141516 | 10257112 ~ 10260714 (+) | True | G18873 |
| TU21219 | other | upstream | 160738 | 10239900 ~ 10241492 (+) | True | G18896 |
| TU19459 | other | upstream | 964167 | 9418328 ~ 9438063 (+) | True | G17334 |
| TU21268 | other | downstream | 71074 | 10474984 ~ 10476389 (+) | True | G18937 |
| TU21318 | other | downstream | 134562 | 10538472 ~ 10539750 (+) | False | CI01000001_10538498_10539667 |
| TU21319 | other | downstream | 134562 | 10538472 ~ 10539846 (+) | True | CI01000001_10538498_10539667 |
| TU21382 | other | downstream | 447014 | 10850924 ~ 10853983 (+) | True | G19039 |
| TU21702 | other | downstream | 1097284 | 11501194 ~ 11558673 (+) | True | G19314 |
