RNA id: TU21284


Basic Information

Item Value
RNA id TU21284
length 378
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G18951
representative False

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10431957 ~ 10433760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAAAGCTCCACACAATCAGCATCAGCCACCATACAGGCACAGTGCAGGGGCTTCAGCGTGCCGTGCATTCTGTTCACATCTGCTCCCCTGCGTATAAGGTCTTCCACGTTATCATGTGGGAAGGAGCGAATGGCCGCTATGGTTCGAATGAGTCTTTCTGACAATGAGTATTTGCTCTGAATACTCTGCATGATGTACCACATAGTAGAGCTCATGTGGAACTAAAGGACATTTCACCCAGACCGGGTGACGCCACACCGAGATGAGATGGCTGTGAAAGTGGGAAAAATGATCCTAGGAAAATACAAAACAGAAAATCTATTAACAAGAGAATGATGTTGACAGAACAAGTAATATCTTTACATTAGGAATCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21204 lncRNA upstream 28047 10402230 ~ 10403910 (+) True G18882
TU21194 lncRNA upstream 40359 10390688 ~ 10391598 (+) True G18876
TU21200 lncRNA upstream 87836 10340037 ~ 10344121 (+) True G18878
TU21202 lncRNA upstream 93808 10336887 ~ 10338149 (+) True G18880
TU21192 lncRNA upstream 96041 10284763 ~ 10335916 (+) True G18874
TU21301 lncRNA downstream 1810 10434219 ~ 10434542 (+) True G18967
TU21302 lncRNA downstream 3361 10435770 ~ 10435995 (+) True G18968
TU21303 lncRNA downstream 4244 10436653 ~ 10436873 (+) True G18969
TU21256 lncRNA downstream 4917 10437326 ~ 10440371 (+) True G18929
TU21264 lncRNA downstream 52739 10485148 ~ 10487561 (+) True G18933
CI01000001_10420931_10426716.mRNA mRNA upstream 4810 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10395420_10396473.mRNA mRNA upstream 35484 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10328133_10329110.mRNA mRNA upstream 102847 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10321783_10325266.mRNA mRNA upstream 106652 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10150798_10152858.mRNA mRNA upstream 279019 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10525795_10530510.mRNA mRNA downstream 90853 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10538498_10539667.mRNA mRNA downstream 105979 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10573770_10582123.mRNA mRNA downstream 141361 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10582439_10582802.mRNA mRNA downstream 149969 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10590766_10595793.mRNA mRNA downstream 158027 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
TU21193 other upstream 35252 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 150588 10271146 ~ 10281369 (+) True G18872
TU21190 other upstream 171243 10257112 ~ 10260714 (+) True G18873
TU21219 other upstream 190465 10239900 ~ 10241492 (+) True G18896
TU19459 other upstream 993894 9418328 ~ 9438063 (+) True G17334
TU21268 other downstream 42575 10474984 ~ 10476389 (+) True G18937
TU21318 other downstream 106063 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21319 other downstream 106063 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21382 other downstream 418515 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 1068785 11501194 ~ 11558673 (+) True G19314

Expression Profile