RNA id: TU21264



Basic Information


Item Value
RNA id TU21264
length 2300
lncRNA type antisense_over
GC content 0.33
exon number 3
gene id G18933
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10485148 ~ 10487561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGAAAAAACTGCTCAAGCCGTTCCAAAAACCAAAGGTGGTGACAATAGCAAAAGACAACGTCCAATTATAAATATTAAATGGGTTCAAATTTGACTTGTTTAAGTGGTCCTGAATGTGCACTCCGGTTCTATCAAAATGATATTAGATACAAAATAAACCCTGAGAAGAAACTGTGATCAACATTAATTGTTCAAAATAAACGTTTAACATACAAGAAAATGGTTAAAGGATAAATAGTAAATGTAAGTTTTAATAAGAACATCTTTAAAAGTCAGTCCTTGTATATTTTGAGGTTTTTGAACACTTTCTTTGTTGCGCAGCTTGCTTCACATCATTCCTGTTTTTCCAAAGATCCTGATTATCCGTCTCAGTAGACATCAAAGTTAAACTTGTATCAAAAGATGTGCAGAGATGCAGTTTCAGTAAGAGAGGTTGGGACACTACTGAAGGCACAGTAAAACATGAGCGTACATTCAGAGATGATGTGAAGTAGTAGTCAAATCAAACAAATGCACAAAAAACTCAAAATATTTCAGAAATTTCCTTTAAATTCCAGAATCATGTCTAAAAATATGTTACCAGGATATTCTAACAACTGTCTTCTGTTGTTTCATGTTCAAAACATTTCTACAAACCTCAAAACAAGTTTCTAATCACATTCGGATGGCATGATGACAGTTCGGCAGGGTGAAGATCTGTGACATTTTCAGAAAAAGAAAAAAATACAGCAAAATAATATTTACACTGGCCCACTGATTTATCAATATTTTTGGTGCTGATTATGGACATAATCATCAAAGGAGAAGACTAAAAAAATATTGTTGCCATTACATAAAATTACAAGAAAATGTTATATTTAACTCTTCTAGAATGGAGTATTTATATATATAAAAAAGCAAAACTAAAGTATATTGACAATACAATTAATATTATTGATAAGTGGAGGGGGGAAAATAAAATGAACAATAACATTGACATAGCAATAGAATACATTAACTTTATCACATTGCTAATATAAGCATCAATGAAAAATAACATGTAAGTATTTTTGTACAAGGTGTGCCAGGAAAGATTCCAATGCAATTTCTTCCTTTTGAGGAAAAAAAAAGAAAAGAAAAGATAATAATAAAATAATAAAACACCAAATATATACACTGAACCTACAGAATCACCCATCAGATCTCAAACTGCTCTAAAATCAATTTCCGTGTTCTTTACAATTACTAAAATGTGTACCACTGAACTCAACCCTACGGTTACACTCGGAGCTGAACTAGAGATGGGATGGACAACAAGACAACTACGGCCAAACGCTGGCAGGACATCATACTGCCCATGATGCTGAGTGGAAAACAAACAAAACAAAACAAGACAAACTTATATAAAATATATACACATCTAAAATACATTTGTTGATAAAAATGTGTTAGTACACTACGGTAAAAACATTATTTAACAAGCAAAGAGACGTTACTACAGGACTTCATCTACAGCAATTACGGTCAATGGTGTATCAAATCGCCTTCTGTGGTATAAAACAACTTGATATGAACACATACTAGATGAAGCATGTAAACAAATAATATGCATGGCTTTAGGAGGAGATTAGACTGGGACGTTACAAATTGCTGAGCTGATGACTGAAGAAATAGACATTTCAGAACAAACAACAATCTCAATCCTAATTTTGGGAAGTCAAATCTTCAAATAAACCAGTCAAAGATCTTCTGAACAATGTTGTAATCTTGTTTTTGAAGGCAATTTGATCTAACATCAAGTGCTCCTCGGAATTTAGCTATTTTCTAGAAATATACAATGTTAAAACTAAATATTAACTATGAGACAAAGAGGGTTTAGGTGGAGTGTACATGTATGCAGCTCATTTTTAAAGGTGAAGCACTGAAAATGTTGGAAAAAAAATACCAATATTACAGTCATCACTCACTGGTATCCATTAATAGTTTAATGTATCCATCTGTTTAGCTCTATTTGCTTTTCAAATAAAATTTCTATTCTAAAACACCATGCTAAATGGATTTCACTTGAATTTTCTCACAGCAAGTTACCATTCTTTTCACTTTTTCGCCCTGATGAAGCAAATAAAACCAGGCAAGCAGAACATTAACCATAAAACAGTCACATAATTTAACTTCAGGTCCTCTCATCCTTATTCGTTTTCTCCACCTCTATTGTTCCCTGCAGTCTCTTCTCCATATTATCAATCTACAGGAGAAGCTTGCCGTTTCGATGTATTTTCAGAATTTTTCCCAGTCTCTGTTTAGCTGTGGCAAGTCCTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21256 lncRNA upstream 44777 10437326 ~ 10440371 (+) True G18929
TU21303 lncRNA upstream 48275 10436653 ~ 10436873 (+) True G18969
TU21302 lncRNA upstream 49153 10435770 ~ 10435995 (+) True G18968
TU21301 lncRNA upstream 50606 10434219 ~ 10434542 (+) True G18967
TU21285 lncRNA upstream 51388 10432095 ~ 10433760 (+) True G18951
TU21346 lncRNA downstream 11072 10498633 ~ 10500815 (+) True G19011
TU21362 lncRNA downstream 50241 10537802 ~ 10538016 (+) True G19026
TU21365 lncRNA downstream 65783 10553344 ~ 10553661 (+) True G19029
TU21366 lncRNA downstream 66128 10553689 ~ 10553969 (+) True G19030
TU21344 lncRNA downstream 98395 10585956 ~ 10586294 (+) True G19009
CI01000001_10420931_10426716.mRNA mRNA upstream 58001 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10395420_10396473.mRNA mRNA upstream 88675 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10328133_10329110.mRNA mRNA upstream 156038 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10321783_10325266.mRNA mRNA upstream 159843 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10150798_10152858.mRNA mRNA upstream 332210 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10525795_10530510.mRNA mRNA downstream 35701 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10538498_10539667.mRNA mRNA downstream 50827 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10573770_10582123.mRNA mRNA downstream 86209 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10582439_10582802.mRNA mRNA downstream 94817 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10590766_10595793.mRNA mRNA downstream 102875 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
TU21268 other upstream 8759 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 88443 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 203779 10271146 ~ 10281369 (+) True G18872
TU21190 other upstream 224434 10257112 ~ 10260714 (+) True G18873
TU21219 other upstream 243656 10239900 ~ 10241492 (+) True G18896
TU21318 other downstream 50911 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21319 other downstream 50911 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21382 other downstream 363363 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 1013633 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 1193761 11681322 ~ 11681817 (+) True G19395

Expression Profile