RNA id: TU21366


Basic Information

Item Value
RNA id TU21366
length 281
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G19030
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10553689 ~ 10553969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAAATCCCTCTGTAAAAGCCTTCAGAATATAGATAGGAATAAAACTGTAAAGTTTGGTGTATATAAGTTCTGCTGAAGTGGAGATTTCTGACTCAGAGCAGGAGAAAAAACTCATTTTGAGAAAATGGCCTTTAAAGATATTTACTGTAATTGAAATCTATAGACGCAAATAGATAAAGTGCTATAAGATATACACTTAAAAATGTATTTTGGATGTTTTCTTTCCACCAGTCTGAAAAAACACTTTATGAAAAGCCAAAAAGTGCAAAATCTCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21365 lncRNA upstream 28 10553344 ~ 10553661 (+) True G19029
TU21362 lncRNA upstream 15673 10537802 ~ 10538016 (+) True G19026
TU21346 lncRNA upstream 52874 10498633 ~ 10500815 (+) True G19011
TU21264 lncRNA upstream 66128 10485148 ~ 10487561 (+) True G18933
TU21256 lncRNA upstream 113318 10437326 ~ 10440371 (+) True G18929
TU21344 lncRNA downstream 31987 10585956 ~ 10586294 (+) True G19009
TU21343 lncRNA downstream 44635 10598604 ~ 10598814 (+) True G19008
TU21332 lncRNA downstream 45057 10599026 ~ 10599251 (+) True G18997
TU21384 lncRNA downstream 100600 10654569 ~ 10654922 (+) True G19041
TU21333 lncRNA downstream 101418 10655387 ~ 10657271 (+) True G18998
CI01000001_10538498_10539667.mRNA mRNA upstream 13987 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10525795_10530510.mRNA mRNA upstream 23146 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10420931_10426716.mRNA mRNA upstream 126542 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10395420_10396473.mRNA mRNA upstream 157216 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10328133_10329110.mRNA mRNA upstream 224579 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10573770_10582123.mRNA mRNA downstream 19801 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10582439_10582802.mRNA mRNA downstream 28409 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10590766_10595793.mRNA mRNA downstream 36467 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
CI01000001_10604980_10633286.mRNA mRNA downstream 49919 10603888 ~ 10633540 (+) True CI01000001_10604980_10633286
CI01000001_10688354_10691353.mRNA mRNA downstream 133893 10687862 ~ 10691409 (+) True CI01000001_10688354_10691353
TU21319 other upstream 13843 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 13939 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 77300 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 156984 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 272320 10271146 ~ 10281369 (+) True G18872
TU21382 other downstream 296955 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 947225 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 1127353 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2959435 13513404 ~ 13513609 (+) True G19868

Expression Profile