RNA id: TU21332


Basic Information

Item Value
RNA id TU21332
length 226
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G18997
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10599026 ~ 10599251 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGATATCAGACAGTCCGTTAAGAGACGAGACGTGCTGACAGATAAAATAAATACATGATTGTGATAGCCTACGTATATGATTTGTCTGATTTCTTCAAGCCGTCGTATTTACCATGTTTACTATGGTAATAGCGCGCATAGTCTTGGTGATCAGAATCCACATCGGATCACAAACAGAAGTTATTTCAAACACTTGCTGCTGTCTGAAAGTGAGTTTTGAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21343 lncRNA upstream 212 10598604 ~ 10598814 (+) True G19008
TU21344 lncRNA upstream 12732 10585956 ~ 10586294 (+) True G19009
TU21366 lncRNA upstream 45057 10553689 ~ 10553969 (+) True G19030
TU21365 lncRNA upstream 45365 10553344 ~ 10553661 (+) True G19029
TU21362 lncRNA upstream 61010 10537802 ~ 10538016 (+) True G19026
TU21384 lncRNA downstream 55318 10654569 ~ 10654922 (+) True G19041
TU21333 lncRNA downstream 56136 10655387 ~ 10657271 (+) True G18998
TU21423 lncRNA downstream 215139 10814390 ~ 10815702 (+) True G19080
TU21430 lncRNA downstream 274731 10873982 ~ 10874233 (+) True G19087
TU21431 lncRNA downstream 275419 10874670 ~ 10874871 (+) True G19088
CI01000001_10590766_10595793.mRNA mRNA upstream 2788 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
CI01000001_10582439_10582802.mRNA mRNA upstream 16205 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10573770_10582123.mRNA mRNA upstream 16788 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10538498_10539667.mRNA mRNA upstream 59324 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10525795_10530510.mRNA mRNA upstream 68483 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10604980_10633286.mRNA mRNA downstream 4637 10603888 ~ 10633540 (+) True CI01000001_10604980_10633286
CI01000001_10688354_10691353.mRNA mRNA downstream 88611 10687862 ~ 10691409 (+) True CI01000001_10688354_10691353
CI01000001_10694664_10713151.mRNA mRNA downstream 95216 10694467 ~ 10714684 (+) True CI01000001_10694664_10713151
CI01000001_10715529_10716091.mRNA mRNA downstream 115863 10715114 ~ 10716910 (+) True CI01000001_10715529_10716091
CI01000001_10749174_10779222.mRNA mRNA downstream 149923 10749174 ~ 10779454 (+) True CI01000001_10749174_10779222
TU21319 other upstream 59180 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 59276 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 122637 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 202321 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 317657 10271146 ~ 10281369 (+) True G18872
TU21382 other downstream 251673 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 901943 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 1082071 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2914153 13513404 ~ 13513609 (+) True G19868

Expression Profile