RNA id: TU21384


Basic Information

Item Value
RNA id TU21384
length 354
lncRNA type intronic
GC content 0.43
exon number 1
gene id G19041
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10654569 ~ 10654922 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTAATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTTGTTCATCTTCAGAACACAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTGCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAACATTATAAAGCCACGAGAATAACAAAATAACAAAATAACGACTTATATAGTGATGGCCGATTTCAAAACACTGCTTCATGAAGCTTCGGAGCGTTATGAATCTTTTGTGTCGAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21332 lncRNA upstream 55318 10599026 ~ 10599251 (+) True G18997
TU21343 lncRNA upstream 55755 10598604 ~ 10598814 (+) True G19008
TU21344 lncRNA upstream 68275 10585956 ~ 10586294 (+) True G19009
TU21366 lncRNA upstream 100600 10553689 ~ 10553969 (+) True G19030
TU21365 lncRNA upstream 100908 10553344 ~ 10553661 (+) True G19029
TU21333 lncRNA downstream 465 10655387 ~ 10657271 (+) True G18998
TU21423 lncRNA downstream 159468 10814390 ~ 10815702 (+) True G19080
TU21430 lncRNA downstream 219060 10873982 ~ 10874233 (+) True G19087
TU21431 lncRNA downstream 219748 10874670 ~ 10874871 (+) True G19088
TU21375 lncRNA downstream 237515 10892437 ~ 10896905 (+) True G19034
CI01000001_10604980_10633286.mRNA mRNA upstream 21029 10603888 ~ 10633540 (+) True CI01000001_10604980_10633286
CI01000001_10590766_10595793.mRNA mRNA upstream 58331 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
CI01000001_10582439_10582802.mRNA mRNA upstream 71748 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10573770_10582123.mRNA mRNA upstream 72331 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10538498_10539667.mRNA mRNA upstream 114867 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10688354_10691353.mRNA mRNA downstream 32940 10687862 ~ 10691409 (+) True CI01000001_10688354_10691353
CI01000001_10694664_10713151.mRNA mRNA downstream 39545 10694467 ~ 10714684 (+) True CI01000001_10694664_10713151
CI01000001_10715529_10716091.mRNA mRNA downstream 60192 10715114 ~ 10716910 (+) True CI01000001_10715529_10716091
CI01000001_10749174_10779222.mRNA mRNA downstream 94252 10749174 ~ 10779454 (+) True CI01000001_10749174_10779222
CI01000001_10807407_10818870.mRNA mRNA downstream 152398 10807320 ~ 10820053 (+) True CI01000001_10807407_10818870
TU21319 other upstream 114723 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 114819 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 178180 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 257864 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 373200 10271146 ~ 10281369 (+) True G18872
TU21382 other downstream 196002 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 846272 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 1026400 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2858482 13513404 ~ 13513609 (+) True G19868

Expression Profile