RNA id: TU21423


Basic Information

Item Value
RNA id TU21423
length 336
lncRNA type intronic
GC content 0.27
exon number 2
gene id G19080
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10814390 ~ 10815702 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGCTCCAGCGGCCTCGTTCAAATTTAATTACAAATATGCTTAGATTTTAGAAGGGTTGTGAAACATATAGCATTAAAAAAAAAGATCCTCTGGGAGAAAGATTGGAACCACTGAATTAGAGTATCATTCCGACTGTACAGAGATAACGATATTAGCAATCCAACTAGAGCAGCCCCAGTGAAACAAGATATTGAGTACATAATATAATTGAGATCGAAACTACCTAATTAGATTTGTGTATTTATCTGCTTTAATAATCATGTTTACTACATCCTTTAATTATGCTTTCCAAAGCTCAGGGGCTGTATAAAAACAGCAAACCAGTATCCCGTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21333 lncRNA upstream 157119 10655387 ~ 10657271 (+) True G18998
TU21384 lncRNA upstream 159468 10654569 ~ 10654922 (+) True G19041
TU21332 lncRNA upstream 215139 10599026 ~ 10599251 (+) True G18997
TU21343 lncRNA upstream 215576 10598604 ~ 10598814 (+) True G19008
TU21344 lncRNA upstream 228096 10585956 ~ 10586294 (+) True G19009
TU21430 lncRNA downstream 58280 10873982 ~ 10874233 (+) True G19087
TU21431 lncRNA downstream 58968 10874670 ~ 10874871 (+) True G19088
TU21375 lncRNA downstream 76735 10892437 ~ 10896905 (+) True G19034
TU21493 lncRNA downstream 109826 10925528 ~ 10986466 (+) True G19130
TU21484 lncRNA downstream 255202 11070904 ~ 11126159 (+) True G19121
CI01000001_10749174_10779222.mRNA mRNA upstream 34936 10749174 ~ 10779454 (+) True CI01000001_10749174_10779222
CI01000001_10715529_10716091.mRNA mRNA upstream 97480 10715114 ~ 10716910 (+) True CI01000001_10715529_10716091
CI01000001_10694664_10713151.mRNA mRNA upstream 99706 10694467 ~ 10714684 (+) True CI01000001_10694664_10713151
CI01000001_10688354_10691353.mRNA mRNA upstream 122981 10687862 ~ 10691409 (+) True CI01000001_10688354_10691353
CI01000001_10604980_10633286.mRNA mRNA upstream 180850 10603888 ~ 10633540 (+) True CI01000001_10604980_10633286
CI01000001_10856786_10861403.mRNA mRNA downstream 40258 10855960 ~ 10862138 (+) True CI01000001_10856786_10861403
CI01000001_10968536_10981345.mRNA mRNA downstream 152642 10968344 ~ 10981787 (+) True CI01000001_10968536_10981345
CI01000001_10989337_10992917.mRNA mRNA downstream 173635 10989337 ~ 10992978 (+) True CI01000001_10989337_10992917
CI01000001_11019871_11028065.mRNA mRNA downstream 203777 11019479 ~ 11028524 (+) True CI01000001_11019871_11028065
CI01000001_11099313_11137500.mRNA mRNA downstream 283611 11099313 ~ 11138278 (+) True CI01000001_11099313_11137500
TU21319 other upstream 274544 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 274640 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 338001 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 417685 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 533021 10271146 ~ 10281369 (+) True G18872
TU21382 other downstream 35222 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 685492 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 865620 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2697702 13513404 ~ 13513609 (+) True G19868

Expression Profile