Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU21382 |
| length | 3060 |
| RNA type | TUCP |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G19039 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 10850924 ~ 10853983 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU21423 | lncRNA | upstream | 35222 | 10814390 ~ 10815702 (+) | True | G19080 |
| TU21333 | lncRNA | upstream | 193653 | 10655387 ~ 10657271 (+) | True | G18998 |
| TU21384 | lncRNA | upstream | 196002 | 10654569 ~ 10654922 (+) | True | G19041 |
| TU21332 | lncRNA | upstream | 251673 | 10599026 ~ 10599251 (+) | True | G18997 |
| TU21343 | lncRNA | upstream | 252110 | 10598604 ~ 10598814 (+) | True | G19008 |
| TU21430 | lncRNA | downstream | 19999 | 10873982 ~ 10874233 (+) | True | G19087 |
| TU21431 | lncRNA | downstream | 20687 | 10874670 ~ 10874871 (+) | True | G19088 |
| TU21375 | lncRNA | downstream | 38454 | 10892437 ~ 10896905 (+) | True | G19034 |
| TU21493 | lncRNA | downstream | 71545 | 10925528 ~ 10986466 (+) | True | G19130 |
| TU21484 | lncRNA | downstream | 216921 | 11070904 ~ 11126159 (+) | True | G19121 |
| CI01000001_10807407_10818870.mRNA | mRNA | upstream | 30871 | 10807320 ~ 10820053 (+) | True | CI01000001_10807407_10818870 |
| CI01000001_10749174_10779222.mRNA | mRNA | upstream | 71470 | 10749174 ~ 10779454 (+) | True | CI01000001_10749174_10779222 |
| CI01000001_10715529_10716091.mRNA | mRNA | upstream | 134014 | 10715114 ~ 10716910 (+) | True | CI01000001_10715529_10716091 |
| CI01000001_10694664_10713151.mRNA | mRNA | upstream | 136240 | 10694467 ~ 10714684 (+) | True | CI01000001_10694664_10713151 |
| CI01000001_10688354_10691353.mRNA | mRNA | upstream | 159515 | 10687862 ~ 10691409 (+) | True | CI01000001_10688354_10691353 |
| CI01000001_10856786_10861403.mRNA | mRNA | downstream | 1977 | 10855960 ~ 10862138 (+) | True | CI01000001_10856786_10861403 |
| CI01000001_10968536_10981345.mRNA | mRNA | downstream | 114361 | 10968344 ~ 10981787 (+) | True | CI01000001_10968536_10981345 |
| CI01000001_10989337_10992917.mRNA | mRNA | downstream | 135354 | 10989337 ~ 10992978 (+) | True | CI01000001_10989337_10992917 |
| CI01000001_11019871_11028065.mRNA | mRNA | downstream | 165496 | 11019479 ~ 11028524 (+) | True | CI01000001_11019871_11028065 |
| CI01000001_11099313_11137500.mRNA | mRNA | downstream | 245330 | 11099313 ~ 11138278 (+) | True | CI01000001_11099313_11137500 |
| TU21319 | other | upstream | 311078 | 10538472 ~ 10539846 (+) | True | CI01000001_10538498_10539667 |
| TU21318 | other | upstream | 311174 | 10538472 ~ 10539750 (+) | False | CI01000001_10538498_10539667 |
| TU21268 | other | upstream | 374535 | 10474984 ~ 10476389 (+) | True | G18937 |
| TU21193 | other | upstream | 454219 | 10393557 ~ 10395953 (+) | True | G18875 |
| TU21188 | other | upstream | 569555 | 10271146 ~ 10281369 (+) | True | G18872 |
| TU21702 | other | downstream | 647211 | 11501194 ~ 11558673 (+) | True | G19314 |
| TU21803 | other | downstream | 827339 | 11681322 ~ 11681817 (+) | True | G19395 |
| TU22314 | other | downstream | 2659421 | 13513404 ~ 13513609 (+) | True | G19868 |
