RNA id: TU21430


Basic Information

Item Value
RNA id TU21430
length 252
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G19087
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10873982 ~ 10874233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATTGTGGACTGGATATTTTTTTACCTTTTATCACAGTCTTGGACATGTGAAAGATTAGTAACAACATTGGCTTTGATGCATTGTTAGTTTTTGTGCAGCATCAGATTTTAATTTTTTCTCCCTCATTTACTGTTCGTGGCTGTTTTTGCCCCATTGACTTCCATTATAACGACATTTTTTGATTGCAAAGCCATGACACCATATAATCAAGCATTCTTGATTGTTGGTGGTTTTCCCTGTTGGGAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21423 lncRNA upstream 58280 10814390 ~ 10815702 (+) True G19080
TU21333 lncRNA upstream 216711 10655387 ~ 10657271 (+) True G18998
TU21384 lncRNA upstream 219060 10654569 ~ 10654922 (+) True G19041
TU21332 lncRNA upstream 274731 10599026 ~ 10599251 (+) True G18997
TU21343 lncRNA upstream 275168 10598604 ~ 10598814 (+) True G19008
TU21431 lncRNA downstream 437 10874670 ~ 10874871 (+) True G19088
TU21375 lncRNA downstream 18204 10892437 ~ 10896905 (+) True G19034
TU21493 lncRNA downstream 51295 10925528 ~ 10986466 (+) True G19130
TU21484 lncRNA downstream 196671 11070904 ~ 11126159 (+) True G19121
TU21596 lncRNA downstream 295060 11169293 ~ 11183770 (+) True G19226
CI01000001_10856786_10861403.mRNA mRNA upstream 11844 10855960 ~ 10862138 (+) True CI01000001_10856786_10861403
CI01000001_10807407_10818870.mRNA mRNA upstream 53929 10807320 ~ 10820053 (+) True CI01000001_10807407_10818870
CI01000001_10749174_10779222.mRNA mRNA upstream 94528 10749174 ~ 10779454 (+) True CI01000001_10749174_10779222
CI01000001_10715529_10716091.mRNA mRNA upstream 157072 10715114 ~ 10716910 (+) True CI01000001_10715529_10716091
CI01000001_10694664_10713151.mRNA mRNA upstream 159298 10694467 ~ 10714684 (+) True CI01000001_10694664_10713151
CI01000001_10968536_10981345.mRNA mRNA downstream 94111 10968344 ~ 10981787 (+) True CI01000001_10968536_10981345
CI01000001_10989337_10992917.mRNA mRNA downstream 115104 10989337 ~ 10992978 (+) True CI01000001_10989337_10992917
CI01000001_11019871_11028065.mRNA mRNA downstream 145246 11019479 ~ 11028524 (+) True CI01000001_11019871_11028065
CI01000001_11099313_11137500.mRNA mRNA downstream 225080 11099313 ~ 11138278 (+) True CI01000001_11099313_11137500
CI01000001_11138617_11139541.mRNA mRNA downstream 264052 11138285 ~ 11139673 (+) True CI01000001_11138617_11139541
TU21382 other upstream 19999 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 334136 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 334232 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 397593 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 477277 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 626961 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 807089 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2639171 13513404 ~ 13513609 (+) True G19868

Expression Profile