RNA id: TU21596


Basic Information

Item Value
RNA id TU21596
length 290
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G19226
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11169293 ~ 11183770 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAAAGTCTTAAAGTATCTGATTTTAACAGTATTTTACTCGTGCTGAATGTAGGCTCAGAGATGCACTAGTCCTGAGAGACATGCCAGTGAAAATAAGAAACAATTGATTTGTAAGATGAGAAATCAAGTTTATTTTCTAAAATCAAAATAAAACTGAACACCTCAATGCTGCAATAAATCAAGGTCGACACAACAACCTTTTAAACGTCAAGTCTCAGTTGAGCTCAAGTGCACAGAAAGGTCATAAGTAAACCAATGTCCTTCAAAACGGTCTTGTCAATATAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21484 lncRNA upstream 43134 11070904 ~ 11126159 (+) True G19121
TU21493 lncRNA upstream 182827 10925528 ~ 10986466 (+) True G19130
TU21375 lncRNA upstream 272388 10892437 ~ 10896905 (+) True G19034
TU21431 lncRNA upstream 294422 10874670 ~ 10874871 (+) True G19088
TU21430 lncRNA upstream 295060 10873982 ~ 10874233 (+) True G19087
TU21459 lncRNA downstream 71299 11255069 ~ 11304024 (+) True G19096
TU21471 lncRNA downstream 197804 11381574 ~ 11381987 (+) True G19108
TU21630 lncRNA downstream 203873 11387643 ~ 11387959 (+) True G19258
TU21631 lncRNA downstream 205785 11389555 ~ 11389858 (+) True G19259
TU21642 lncRNA downstream 244334 11428104 ~ 11493856 (+) False G19266
CI01000001_11138617_11139541.mRNA mRNA upstream 29620 11138285 ~ 11139673 (+) True CI01000001_11138617_11139541
CI01000001_11099313_11137500.mRNA mRNA upstream 31015 11099313 ~ 11138278 (+) True CI01000001_11099313_11137500
CI01000001_11019871_11028065.mRNA mRNA upstream 140769 11019479 ~ 11028524 (+) True CI01000001_11019871_11028065
CI01000001_10989337_10992917.mRNA mRNA upstream 176315 10989337 ~ 10992978 (+) True CI01000001_10989337_10992917
CI01000001_10968536_10981345.mRNA mRNA upstream 187506 10968344 ~ 10981787 (+) True CI01000001_10968536_10981345
CI01000001_11216246_11230227.mRNA mRNA downstream 32476 11216246 ~ 11230321 (+) True CI01000001_11216246_11230227
CI01000001_11232168_11238289.mRNA mRNA downstream 48398 11232168 ~ 11238655 (+) True CI01000001_11232168_11238289
CI01000001_11246797_11247315.mRNA mRNA downstream 62879 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11265638_11283027.mRNA mRNA downstream 81868 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11359106_11376288.mRNA mRNA downstream 175336 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
TU21382 other upstream 315310 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 629447 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 629543 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 692904 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 772588 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 317424 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 497552 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2329634 13513404 ~ 13513609 (+) True G19868

Expression Profile