Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU21459 |
| length | 2853 |
| lncRNA type | read_through |
| GC content | 0.50 |
| exon number | 2 |
| gene id | G19096 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 11255069 ~ 11304024 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU21596 | lncRNA | upstream | 71299 | 11169293 ~ 11183770 (+) | True | G19226 |
| TU21484 | lncRNA | upstream | 128910 | 11070904 ~ 11126159 (+) | True | G19121 |
| TU21493 | lncRNA | upstream | 268603 | 10925528 ~ 10986466 (+) | True | G19130 |
| TU21375 | lncRNA | upstream | 358164 | 10892437 ~ 10896905 (+) | True | G19034 |
| TU21431 | lncRNA | upstream | 380198 | 10874670 ~ 10874871 (+) | True | G19088 |
| TU21471 | lncRNA | downstream | 77550 | 11381574 ~ 11381987 (+) | True | G19108 |
| TU21630 | lncRNA | downstream | 83619 | 11387643 ~ 11387959 (+) | True | G19258 |
| TU21631 | lncRNA | downstream | 85531 | 11389555 ~ 11389858 (+) | True | G19259 |
| TU21642 | lncRNA | downstream | 124080 | 11428104 ~ 11493856 (+) | False | G19266 |
| TU21647 | lncRNA | downstream | 124080 | 11428104 ~ 11493856 (+) | True | G19266 |
| CI01000001_11246797_11247315.mRNA | mRNA | upstream | 7528 | 11246649 ~ 11247541 (+) | True | CI01000001_11246797_11247315 |
| CI01000001_11232168_11238289.mRNA | mRNA | upstream | 16414 | 11232168 ~ 11238655 (+) | True | CI01000001_11232168_11238289 |
| CI01000001_11216246_11230227.mRNA | mRNA | upstream | 24748 | 11216246 ~ 11230321 (+) | True | CI01000001_11216246_11230227 |
| CI01000001_11182552_11204143.mRNA | mRNA | upstream | 50570 | 11182552 ~ 11204499 (+) | True | CI01000001_11182552_11204143 |
| CI01000001_11138617_11139541.mRNA | mRNA | upstream | 115396 | 11138285 ~ 11139673 (+) | True | CI01000001_11138617_11139541 |
| CI01000001_11359106_11376288.mRNA | mRNA | downstream | 55082 | 11359106 ~ 11376885 (+) | True | CI01000001_11359106_11376288 |
| CI01000001_11431153_11431434.mRNA | mRNA | downstream | 125852 | 11429876 ~ 11431587 (+) | True | CI01000001_11431153_11431434 |
| CI01000001_11440491_11445508.mRNA | mRNA | downstream | 135955 | 11439979 ~ 11445540 (+) | True | CI01000001_11440491_11445508 |
| CI01000001_11656975_11660666.mRNA | mRNA | downstream | 352005 | 11656029 ~ 11661866 (+) | True | CI01000001_11656975_11660666 |
| CI01000001_11756218_11760009.mRNA | mRNA | downstream | 452137 | 11756161 ~ 11761497 (+) | True | CI01000001_11756218_11760009 |
| TU21382 | other | upstream | 401086 | 10850924 ~ 10853983 (+) | True | G19039 |
| TU21319 | other | upstream | 715223 | 10538472 ~ 10539846 (+) | True | CI01000001_10538498_10539667 |
| TU21318 | other | upstream | 715319 | 10538472 ~ 10539750 (+) | False | CI01000001_10538498_10539667 |
| TU21268 | other | upstream | 778680 | 10474984 ~ 10476389 (+) | True | G18937 |
| TU21193 | other | upstream | 858364 | 10393557 ~ 10395953 (+) | True | G18875 |
| TU21702 | other | downstream | 197170 | 11501194 ~ 11558673 (+) | True | G19314 |
| TU21803 | other | downstream | 377298 | 11681322 ~ 11681817 (+) | True | G19395 |
| TU22314 | other | downstream | 2209380 | 13513404 ~ 13513609 (+) | True | G19868 |
