RNA id: TU21471


Basic Information

Item Value
RNA id TU21471
length 414
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G19108
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11381574 ~ 11381987 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAAAAGCTGTTTTAAACGCAAAGGGTGATAGAAGTTAATTGATCAGTAAAATCCCTTTATGACATTATTTTTGAAAGCATCCTCTCTTTACAGCATTTTTACACAAGTGCCTAAAACTTCTCACAGTACTGTATCTTTGCTGCAGTTCTTCTGGATTTAATTTGTCTCAATTTCATCAGTTTCTTCATTTAATCACAGACAGACTCTGATGGTGAGATCAGATTTCCGTGTGGAGCACCGGCTGTTGTCAGACTCCTTGTGCATACAAAAGATATCACTGGATTATTACAATTAATGGCAAAATGAATGTTTAGAAATATGAACTGACATTTCCTACTGATACACTACAGCAAAAGATATAAATAACTGGCTTAAAACCATTTTTGGGGGTGAAAATACTGACGTGGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21459 lncRNA upstream 77550 11255069 ~ 11304024 (+) True G19096
TU21596 lncRNA upstream 197804 11169293 ~ 11183770 (+) True G19226
TU21484 lncRNA upstream 255415 11070904 ~ 11126159 (+) True G19121
TU21493 lncRNA upstream 395108 10925528 ~ 10986466 (+) True G19130
TU21375 lncRNA upstream 484669 10892437 ~ 10896905 (+) True G19034
TU21630 lncRNA downstream 5656 11387643 ~ 11387959 (+) True G19258
TU21631 lncRNA downstream 7568 11389555 ~ 11389858 (+) True G19259
TU21642 lncRNA downstream 46117 11428104 ~ 11493856 (+) False G19266
TU21647 lncRNA downstream 46117 11428104 ~ 11493856 (+) True G19266
TU21700 lncRNA downstream 118230 11500217 ~ 11500514 (+) True G19312
CI01000001_11359106_11376288.mRNA mRNA upstream 4689 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 98338 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11246797_11247315.mRNA mRNA upstream 134033 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11232168_11238289.mRNA mRNA upstream 142919 11232168 ~ 11238655 (+) True CI01000001_11232168_11238289
CI01000001_11216246_11230227.mRNA mRNA upstream 151253 11216246 ~ 11230321 (+) True CI01000001_11216246_11230227
CI01000001_11431153_11431434.mRNA mRNA downstream 47889 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11440491_11445508.mRNA mRNA downstream 57992 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11656975_11660666.mRNA mRNA downstream 274042 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11756218_11760009.mRNA mRNA downstream 374174 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 427440 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
TU21382 other upstream 527591 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 841728 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 841824 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 905185 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 984869 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 119207 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 299335 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2131417 13513404 ~ 13513609 (+) True G19868

Expression Profile