RNA id: TU21630


Basic Information

Item Value
RNA id TU21630
length 317
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G19258
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11387643 ~ 11387959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTAACCCTTTAAACATCAATTATCTTCTGATTGGCTGTGGCATAGCTCAGCAGTTTTGTGTTTAGTGTGGTTAGACAAATTGTTTGTTGTTGGAAACGTGTCAAATAATGTCTCACGTCCAAATTAAATTCAGATATAAAGGGTCCTTCTGAATGACATGTTTAACTATCACACACTTGAGATTAAGTATCGTTTAGGAGATAGAGGATGTGTCAAAAGTAAAGTTAAAGCAAACATATCTCTTTACATTCAACTATCTGCCACAAAATGTCTTTTAAAGTTTTCATGTCATGTACACAGACTTTTTTTCCCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21471 lncRNA upstream 5656 11381574 ~ 11381987 (+) True G19108
TU21459 lncRNA upstream 83619 11255069 ~ 11304024 (+) True G19096
TU21596 lncRNA upstream 203873 11169293 ~ 11183770 (+) True G19226
TU21484 lncRNA upstream 261484 11070904 ~ 11126159 (+) True G19121
TU21493 lncRNA upstream 401177 10925528 ~ 10986466 (+) True G19130
TU21631 lncRNA downstream 1596 11389555 ~ 11389858 (+) True G19259
TU21642 lncRNA downstream 40145 11428104 ~ 11493856 (+) False G19266
TU21647 lncRNA downstream 40145 11428104 ~ 11493856 (+) True G19266
TU21700 lncRNA downstream 112258 11500217 ~ 11500514 (+) True G19312
TU21742 lncRNA downstream 281005 11668964 ~ 11670995 (+) True G19349
CI01000001_11359106_11376288.mRNA mRNA upstream 10758 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 104407 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11246797_11247315.mRNA mRNA upstream 140102 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11232168_11238289.mRNA mRNA upstream 148988 11232168 ~ 11238655 (+) True CI01000001_11232168_11238289
CI01000001_11216246_11230227.mRNA mRNA upstream 157322 11216246 ~ 11230321 (+) True CI01000001_11216246_11230227
CI01000001_11431153_11431434.mRNA mRNA downstream 41917 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11440491_11445508.mRNA mRNA downstream 52020 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11656975_11660666.mRNA mRNA downstream 268070 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11756218_11760009.mRNA mRNA downstream 368202 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 421468 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
TU21382 other upstream 533660 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 847797 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 847893 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 911254 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 990938 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 113235 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 293363 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2125445 13513404 ~ 13513609 (+) True G19868

Expression Profile