RNA id: TU21642



Basic Information


Item Value
RNA id TU21642
length 591
lncRNA type read_through
GC content 0.56
exon number 2
gene id G19266
representative False

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11428104 ~ 11493856 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTGGTGGGCTGGTAGCTGTCGTCCTTGTGCGGGCTTCCCACCGAGTCCTTGTCCTCTTGATAACTGCCCTCGTGAGAGCCGGGCATGGTGTCAGCATCTTCTGCGTTGTCTTCTTCATCGCTGCAGCCTTTGGGCTGTACCATGTACACGCCTTCAGGGGGATCGTCATTTACATTGTTGGGTTTGAGTCCCCTGTGCTCACCCTCTTCAAAGGACTGTGGATCGTCGGCATACTCGCCGTTCACCCACTTCTCAATGGCCTCGCGCCGTTTCTGGTCCTCCTCAAGGCTCTGGCCCAGGGTCAGGGCCTCTGGGAAGTCGCTTTCAGGCCGGTCACCCTCATCGTAGAGCAAGCTGCCCCGCTCGCTGTTGTCCACTAGGTCTGAGTCTCCCTCTGCATTCTGGGAACTGCCGTCGTACACCACCTGCCGGCTAAGCTTGGCACAGATCGCATTCAGTTTTAGGCCACCTTTCCTTTTGGCGGCCATCGTGGATTTTCCTGAGGTCTTTTCAGTGCATAAACTCCTCTCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATGGAAAAAGTCACTTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21631 lncRNA upstream 38246 11389555 ~ 11389858 (+) True G19259
TU21630 lncRNA upstream 40145 11387643 ~ 11387959 (+) True G19258
TU21471 lncRNA upstream 46117 11381574 ~ 11381987 (+) True G19108
TU21459 lncRNA upstream 124080 11255069 ~ 11304024 (+) True G19096
TU21596 lncRNA upstream 244334 11169293 ~ 11183770 (+) True G19226
TU21700 lncRNA downstream 6361 11500217 ~ 11500514 (+) True G19312
TU21742 lncRNA downstream 175108 11668964 ~ 11670995 (+) True G19349
TU21799 lncRNA downstream 186851 11680707 ~ 11680946 (+) True G19394
TU21750 lncRNA downstream 188701 11682557 ~ 11687675 (+) True G19351
TU21765 lncRNA downstream 196069 11689925 ~ 11690609 (+) True G19362
CI01000001_11359106_11376288.mRNA mRNA upstream 51219 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 144868 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11246797_11247315.mRNA mRNA upstream 180563 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11232168_11238289.mRNA mRNA upstream 189449 11232168 ~ 11238655 (+) True CI01000001_11232168_11238289
CI01000001_11216246_11230227.mRNA mRNA upstream 197783 11216246 ~ 11230321 (+) True CI01000001_11216246_11230227
CI01000001_11656975_11660666.mRNA mRNA downstream 162173 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11756218_11760009.mRNA mRNA downstream 262305 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 315571 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11898621_11898914.mRNA mRNA downstream 404441 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
CI01000001_11990189_11991073.mRNA mRNA downstream 494221 11988077 ~ 11991195 (+) True CI01000001_11990189_11991073
TU21382 other upstream 574121 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 888258 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 888354 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 951715 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 1031399 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 7338 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 187466 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2019548 13513404 ~ 13513609 (+) True G19868

Expression Profile