RNA id: TU21700


Basic Information

Item Value
RNA id TU21700
length 298
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G19312
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11500217 ~ 11500514 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTACACCCCCTTTGAAAAGTAACATTTTAAACAATATCTCAATGAACACAAAAACAATTTTCAAAATGTTGACAAGACTAAGTTTAATATAACATCTGTTTAACTTAAAACATGAAAGTGAGGTTAATAATATAACTTAGAGAACAAAATTTTCAGTTTTACTCAAATTAGGGTGATGCAAAAATGAGTACACCCCACTGAAAGTCTCTGGAGCAAAGCTAAATTTTAGACTACAAATGTCTAATTTAACAAGAATTCAAGCACAGGTGAGTCTAATTCTTCATTACACAGGTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21642 lncRNA upstream 6361 11428104 ~ 11493856 (+) False G19266
TU21647 lncRNA upstream 6361 11428104 ~ 11493856 (+) True G19266
TU21631 lncRNA upstream 110359 11389555 ~ 11389858 (+) True G19259
TU21630 lncRNA upstream 112258 11387643 ~ 11387959 (+) True G19258
TU21471 lncRNA upstream 118230 11381574 ~ 11381987 (+) True G19108
TU21742 lncRNA downstream 168450 11668964 ~ 11670995 (+) True G19349
TU21799 lncRNA downstream 180193 11680707 ~ 11680946 (+) True G19394
TU21750 lncRNA downstream 182043 11682557 ~ 11687675 (+) True G19351
TU21765 lncRNA downstream 189411 11689925 ~ 11690609 (+) True G19362
TU21820 lncRNA downstream 256083 11756597 ~ 11758207 (+) True G19411
CI01000001_11440491_11445508.mRNA mRNA upstream 54677 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11431153_11431434.mRNA mRNA upstream 68630 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11359106_11376288.mRNA mRNA upstream 123332 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 216981 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11246797_11247315.mRNA mRNA upstream 252676 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11656975_11660666.mRNA mRNA downstream 155515 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11756218_11760009.mRNA mRNA downstream 255647 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 308913 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11898621_11898914.mRNA mRNA downstream 397783 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
CI01000001_11990189_11991073.mRNA mRNA downstream 487563 11988077 ~ 11991195 (+) True CI01000001_11990189_11991073
TU21382 other upstream 646234 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 960371 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 960467 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 1023828 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 1103512 10393557 ~ 10395953 (+) True G18875
TU21702 other downstream 680 11501194 ~ 11558673 (+) True G19314
TU21803 other downstream 180808 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 2012890 13513404 ~ 13513609 (+) True G19868

Expression Profile