RNA id: TU21742



Basic Information


Item Value
RNA id TU21742
length 664
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G19349
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11668964 ~ 11670995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTTTATTTAGCCTAATGCAGTGCAATAGTTACCCATAATCCAGGGTTAACGCTGTGAACTCTGGGGGCAAAGTATGACTGGTCTACAGCAGGAAGAATCTCAGAAACAACTTTACTCGAAATGTTGCGTTTGCGACAGTGCACCTTAAAACTACAAGAAAGGAGCTTACAAATAGTGTATACACTGATTTAGTATGAATAGAAATGTGTATTTGAACTCTACTGTGGGCTGAACGTCAGCTCTTCAGAAGGAATGTGATCAGCTGCTCTGGTCCTTCATCAAGAGGGGATGATGTTCTTTAACATGACTCTTCATTTTAGGCGTTATAGGATGATGACGACACTTTTCCTCCGTGTCCTGTCCAGTTAGTGTGGATGAACTTCCCAGGGTTTGATAGCAGCTCATATGTATGGGCACCGAAGTAGTCCCTCTGTGCCTGCAGGTTTGCTGGGAGCATGTCGTGCCTGTAACCGTCGTAGAAGGACAGGGCGGTGGTGAAACATGGCATGGGGATCCCCTGCTGCACACCTGTACTTACTACCCTACGCCATGAGTCCTGCAAAACACAAGCCACGTTTATACACTGAATAAAACACATTCTACATGTATTAATCAGCATGGTTTTAGCAGTCTTTCAAGGTAAACCAGGATTCCTACACATTT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21700 lncRNA upstream 168450 11500217 ~ 11500514 (+) True G19312
TU21642 lncRNA upstream 175108 11428104 ~ 11493856 (+) False G19266
TU21647 lncRNA upstream 175108 11428104 ~ 11493856 (+) True G19266
TU21631 lncRNA upstream 279106 11389555 ~ 11389858 (+) True G19259
TU21630 lncRNA upstream 281005 11387643 ~ 11387959 (+) True G19258
TU21799 lncRNA downstream 9712 11680707 ~ 11680946 (+) True G19394
TU21750 lncRNA downstream 11562 11682557 ~ 11687675 (+) True G19351
TU21765 lncRNA downstream 18930 11689925 ~ 11690609 (+) True G19362
TU21820 lncRNA downstream 85602 11756597 ~ 11758207 (+) True G19411
TU21760 lncRNA downstream 123809 11794804 ~ 11797310 (+) True G19358
CI01000001_11656975_11660666.mRNA mRNA upstream 7098 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11440491_11445508.mRNA mRNA upstream 223424 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11431153_11431434.mRNA mRNA upstream 237377 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11359106_11376288.mRNA mRNA upstream 292079 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 385728 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11756218_11760009.mRNA mRNA downstream 85166 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 138432 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11898621_11898914.mRNA mRNA downstream 227302 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
CI01000001_11990189_11991073.mRNA mRNA downstream 317082 11988077 ~ 11991195 (+) True CI01000001_11990189_11991073
CI01000001_11994138_12003906.mRNA mRNA downstream 323143 11994138 ~ 12004100 (+) True CI01000001_11994138_12003906
TU21702 other upstream 110291 11501194 ~ 11558673 (+) True G19314
TU21382 other upstream 814981 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 1129118 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 1129214 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 1192575 10474984 ~ 10476389 (+) True G18937
TU21803 other downstream 10327 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 1842409 13513404 ~ 13513609 (+) True G19868

Expression Profile