RNA id: TU21750


Basic Information

Item Value
RNA id TU21750
length 3008
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G19351
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11682557 ~ 11687675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTTGTAATTTTATTTTTTACCTCATTCACTAAACAGGTCAATGGTGCAAGATTACCATACACAGAATTAAGATATATGCATTACACGTCTAGGCTATACAGCGAATGGATTATAATTATTACAAATACAGGAGACATATTTACATTTTAATCCAAGTTCCATACAACATGAAATATTTACAAAATAAGTATGAAAATGAAGCCAATCTGACAAATAATGTACAGTGTTAATGCCACGGCTGAACTGTTTTCTGTTGTTTCATCACAATGAGAGGGAATGATGTTCATCTGGAAACATTAGGCCTCTGATAGGGGTGATACAGTAAAGCCAGTGTTGCTTCAAAGGCAGCATGGGAAAAACGCATGAGTGAGCACAAAAACAAAGAGGTGAATGCATCAGGAAAAGCAAAACATGTCGTCGTATTTCTAGAAAATATATTCCCTGATGTTAGAAATGAAAATGAACAGGCCTCATCATAACTCTGCCCTCCATATCTAAACTAAATGTGAAAAAGTGCCCTTGTAACACGGTCAAACTCCTATAATAAGCACAGCAACATGTCAGTCCCTAATTAAGATATTTTTCTTCTTTCATCAATAATTCATGCATTTTTAGTGAAACCCAAGGTACATTCAAAGTCCACTTCAATGAGTAAAACACCACAACCTAAAACCATTTTGGTTTCCATTTGAGAAAACAACAAAAACATAGTTCAAGCTTTATTTGTTCTGTTGTTAGTTGTATAAACACATTATGTGCAAAGAGCTGCAAACTAATATATACATTGCAAAACAATAAATACAGTTAATGAAATTCATTATGAATATCACATTAGTCAACCAAGCCACTCAACAAAGATGGTAAATAAAAAAAGTCAAAAACCTTTGCCCTGGCAAATATTCATAACATCAACTCATGTAATTATATCAAAGCTATCCTTCAGTGCTCATTACGCACTCTATATGCCAGATCTGAATATTCAATTTGAACATTTTCACAGATGCTGTAACACTCCAACAGCTCAGATGAGGCCTACAGGCTGGCTGACCCAAGGACTCGACTTTCCGAGCCATTTTCATGTGTTTCCTGTGAAAATGCGCTAAAGCAGCAAGAATATTGACTTCATAAGGAATGACAGTGATCAACCTTCCTGTGACAATGAGTCCTGCTGGTTGTCTGACCAGAGGACTGTTATGTTGTCTGAAACTTCCATCAAGCTGAATCACTGCTAACTTCAGCACTTGTGCTTCGACTGCAAGTCTTCAAACATACAGAGCAAAGATTTTCAAAACAAAAAATAAAAAAGCAGAACGCAAACCATCCCTTTTCTCGCACTGCAACTGCACACTGCACTGCAGTGAACTGCATAAATGGCCCATTTCTACTGACAGTGATGAAACTGTTTTAGTGTCAAACTTCGGTCTAAGTAAATGAGAACGGCTGACTAAAAATGAGGAAAAGTGCCTTTCTTGCCTTTCGTTGTATAATGTAAAACACTGATCACATGTTAATAAAAATAAGTTAAGATAATCAGTAGAGATACATGGTAAATGTTCAATAATATTAAAAAGTGATGCTTAATTCTCAAGAAGAAAAAAGCCTGGTTTAACGATCCTGCTGACTTGAGATTTCTCTGGAAACAGCGAAAAATAATTGAATCCATCATTTCGAAACCGTAACCATTTAAATCAGTATCTCACTCAAGCGTTTGGTCTTCAGAAGAGGCAAAACCATCAGATCTTTCTTGCTAAAACAGCCCCGAAAATGGTGTTTTAGTAATACAGTAAGGACAGAAACCCATGAATAGCTGTATGCACAGTAATCCTGAACGTTATGTACATGTGGATTCATTCGGTCAGGTGTTCTGTGTCTAAGGTAATTCTTTTGCACCATTTTTTTAGCCTAATCTACTGAGGAAATTGTTTAAATCGAGCAGAATACTCCTGTAGGCTACCGAAAGAGTGATATGTGAGAGATCATCACCATCATTCCTTGGTATTATATGTCTTATGGTTACATACAGTACTTTGTTAATGGTATGTTTTACGTCCTTGATATGTGGAATTAATGTCAAGCAAATACATTACGACAGGCTGGGCGAGTAAACGGCTGTATGTACATGGTCAACATCCCGACTATCATGGCTTGCTTTGATTCAGCAAACCCATTAAGCCAATACTGCAGTAACATTCAGTTTAGGGGTCAATTTTCGTTTAGAAAATTAAGCATCTTCAAGAAGTGCGTTGGTCCATCTAAAAATCTTCTTCTTTTTTTTTTCAGCGATATCTTGAGCAAAGCTATTTGTTTTGTCTATCTTCTATCAGAGAAAGTTGATCATTAATTAAATATGTAATATTTTATATTATAATATATTATAACATTATATTTTTATTATTATTAATAATGTTTCTTTTTTATTCAATGCCTTGTTGTTGTTTTTTAAAGCAAGCCAACTTTCTCCTGAGGGTTGTGGCTCTTGCCACATGGGTAAGATGTTCCTGGCAGACAACACTGTAAGAATGATCTTCACAGACGAGAGTAACTCAAGAGAAAGCAGAACCTGCTCTGAAGATTCGTGCACACACAAATAGACTATTACAACATGCTACTTGAAGGAGGTTCAGTTATGACAAAGAACAAAAACTGAAGACAGAATAAATCCAATCAATAACACAATAGAGAGGGGGGGAGAGGAGAGAGTTGGTGTTCAGGAACTCAAAGTTCATTTGCTGGAGAGGAGAACAGAGCCACAGGTCTACATACAAGAGAAACTGTCAAGAACCACAAAGATTTAGAAGTGTTAACACACTTGGTACGTTGTAAAGGTAGACAGAGAGAAAAGAGCATGTGCGTGTGCGCTCGTTCAGTTCTTCATCAGGCCGGACCGTCTCCTCGCCAGCTTTGACCTTATCGTTCCTGCTAGGAGTGGATTAAAGGCGTACAGCCAGTCATTCATGTCTTTGTCATTGTTGGCCTGGAGGAGGATCCCTCTGTGCTTGGTGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21799 lncRNA upstream 1611 11680707 ~ 11680946 (+) True G19394
TU21742 lncRNA upstream 11562 11668964 ~ 11670995 (+) True G19349
TU21700 lncRNA upstream 182043 11500217 ~ 11500514 (+) True G19312
TU21642 lncRNA upstream 188701 11428104 ~ 11493856 (+) False G19266
TU21647 lncRNA upstream 188701 11428104 ~ 11493856 (+) True G19266
TU21765 lncRNA downstream 2250 11689925 ~ 11690609 (+) True G19362
TU21820 lncRNA downstream 68922 11756597 ~ 11758207 (+) True G19411
TU21760 lncRNA downstream 107129 11794804 ~ 11797310 (+) True G19358
TU21754 lncRNA downstream 126839 11814514 ~ 11814714 (+) True G19353
TU21844 lncRNA downstream 142857 11830532 ~ 11831123 (+) True G19435
CI01000001_11656975_11660666.mRNA mRNA upstream 20691 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11440491_11445508.mRNA mRNA upstream 237017 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11431153_11431434.mRNA mRNA upstream 250970 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11359106_11376288.mRNA mRNA upstream 305672 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 399321 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11756218_11760009.mRNA mRNA downstream 68486 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 121752 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11898621_11898914.mRNA mRNA downstream 210622 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
CI01000001_11990189_11991073.mRNA mRNA downstream 300402 11988077 ~ 11991195 (+) True CI01000001_11990189_11991073
CI01000001_11994138_12003906.mRNA mRNA downstream 306463 11994138 ~ 12004100 (+) True CI01000001_11994138_12003906
TU21803 other upstream 740 11681322 ~ 11681817 (+) True G19395
TU21702 other upstream 123884 11501194 ~ 11558673 (+) True G19314
TU21382 other upstream 828574 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 1142711 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 1142807 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU22314 other downstream 1825729 13513404 ~ 13513609 (+) True G19868

Expression Profile