Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU21765 |
| length | 555 |
| lncRNA type | antisense_over |
| GC content | 0.47 |
| exon number | 2 |
| gene id | G19362 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 11689925 ~ 11690609 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU21750 | lncRNA | upstream | 2250 | 11682557 ~ 11687675 (+) | True | G19351 |
| TU21799 | lncRNA | upstream | 8979 | 11680707 ~ 11680946 (+) | True | G19394 |
| TU21742 | lncRNA | upstream | 18930 | 11668964 ~ 11670995 (+) | True | G19349 |
| TU21700 | lncRNA | upstream | 189411 | 11500217 ~ 11500514 (+) | True | G19312 |
| TU21642 | lncRNA | upstream | 196069 | 11428104 ~ 11493856 (+) | False | G19266 |
| TU21820 | lncRNA | downstream | 65988 | 11756597 ~ 11758207 (+) | True | G19411 |
| TU21760 | lncRNA | downstream | 104195 | 11794804 ~ 11797310 (+) | True | G19358 |
| TU21754 | lncRNA | downstream | 123905 | 11814514 ~ 11814714 (+) | True | G19353 |
| TU21844 | lncRNA | downstream | 139923 | 11830532 ~ 11831123 (+) | True | G19435 |
| TU21847 | lncRNA | downstream | 161745 | 11852354 ~ 11876252 (+) | True | G19438 |
| CI01000001_11656975_11660666.mRNA | mRNA | upstream | 28059 | 11656029 ~ 11661866 (+) | True | CI01000001_11656975_11660666 |
| CI01000001_11440491_11445508.mRNA | mRNA | upstream | 244385 | 11439979 ~ 11445540 (+) | True | CI01000001_11440491_11445508 |
| CI01000001_11431153_11431434.mRNA | mRNA | upstream | 258338 | 11429876 ~ 11431587 (+) | True | CI01000001_11431153_11431434 |
| CI01000001_11359106_11376288.mRNA | mRNA | upstream | 313040 | 11359106 ~ 11376885 (+) | True | CI01000001_11359106_11376288 |
| CI01000001_11265638_11283027.mRNA | mRNA | upstream | 406689 | 11265638 ~ 11283236 (+) | True | CI01000001_11265638_11283027 |
| CI01000001_11756218_11760009.mRNA | mRNA | downstream | 65552 | 11756161 ~ 11761497 (+) | True | CI01000001_11756218_11760009 |
| CI01000001_11809724_11812692.mRNA | mRNA | downstream | 118818 | 11809427 ~ 11813444 (+) | True | CI01000001_11809724_11812692 |
| CI01000001_11898621_11898914.mRNA | mRNA | downstream | 207688 | 11898297 ~ 11900188 (+) | True | CI01000001_11898621_11898914 |
| CI01000001_11990189_11991073.mRNA | mRNA | downstream | 297468 | 11988077 ~ 11991195 (+) | True | CI01000001_11990189_11991073 |
| CI01000001_11994138_12003906.mRNA | mRNA | downstream | 303529 | 11994138 ~ 12004100 (+) | True | CI01000001_11994138_12003906 |
| TU21803 | other | upstream | 8108 | 11681322 ~ 11681817 (+) | True | G19395 |
| TU21702 | other | upstream | 131252 | 11501194 ~ 11558673 (+) | True | G19314 |
| TU21382 | other | upstream | 835942 | 10850924 ~ 10853983 (+) | True | G19039 |
| TU21319 | other | upstream | 1150079 | 10538472 ~ 10539846 (+) | True | CI01000001_10538498_10539667 |
| TU21318 | other | upstream | 1150175 | 10538472 ~ 10539750 (+) | False | CI01000001_10538498_10539667 |
| TU22314 | other | downstream | 1822795 | 13513404 ~ 13513609 (+) | True | G19868 |
