RNA id: TU21847


Basic Information

Item Value
RNA id TU21847
length 221
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G19438
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11852354 ~ 11876252 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGTCAGTCAGTAGCGAAGACTTTTACATTGAAAAGACTGAATTGTTGTGAACACGGAACAAGACACAACTGACAAATGCTTTGACTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATCGGACATTTAAACAGATTTTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21844 lncRNA upstream 21231 11830532 ~ 11831123 (+) True G19435
TU21754 lncRNA upstream 37640 11814514 ~ 11814714 (+) True G19353
TU21760 lncRNA upstream 55044 11794804 ~ 11797310 (+) True G19358
TU21820 lncRNA upstream 94147 11756597 ~ 11758207 (+) True G19411
TU21765 lncRNA upstream 161745 11689925 ~ 11690609 (+) True G19362
TU21902 lncRNA downstream 10696 11886948 ~ 11887201 (+) True G19488
TU21903 lncRNA downstream 11216 11887468 ~ 11887883 (+) True G19489
TU21904 lncRNA downstream 11852 11888104 ~ 11888510 (+) True G19490
TU21883 lncRNA downstream 31365 11907617 ~ 11967369 (+) True G19469
TU21926 lncRNA downstream 115780 11992032 ~ 11992375 (+) True G19512
CI01000001_11809724_11812692.mRNA mRNA upstream 38910 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11756218_11760009.mRNA mRNA upstream 90857 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11656975_11660666.mRNA mRNA upstream 190488 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11440491_11445508.mRNA mRNA upstream 406814 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11431153_11431434.mRNA mRNA upstream 420767 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11898621_11898914.mRNA mRNA downstream 22045 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
CI01000001_11990189_11991073.mRNA mRNA downstream 111825 11988077 ~ 11991195 (+) True CI01000001_11990189_11991073
CI01000001_11994138_12003906.mRNA mRNA downstream 117886 11994138 ~ 12004100 (+) True CI01000001_11994138_12003906
CI01000001_12006266_12048809.mRNA mRNA downstream 129676 12005928 ~ 12049045 (+) True CI01000001_12006266_12048809
CI01000001_12058281_12060612.mRNA mRNA downstream 181503 12057755 ~ 12061261 (+) True CI01000001_12058281_12060612
TU21803 other upstream 170537 11681322 ~ 11681817 (+) True G19395
TU21702 other upstream 293681 11501194 ~ 11558673 (+) True G19314
TU21382 other upstream 998371 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 1312508 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 1312604 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU22314 other downstream 1637152 13513404 ~ 13513609 (+) True G19868

Expression Profile