RNA id: CI01000002_00066136_00130168.mRNA


Basic Information

Item Value
RNA id CI01000002_00066136_00130168.mRNA
length 1290
RNA type mRNA
GC content 0.54
exon number 7
gene id CI01000002_00066136_00130168
representative False

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 66136 ~ 130168 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGTTTCATTGCTGGATTTAAGCGCTCTTGTTCTGTTGCTCGTGTGGGGATACTGCGTCCTGGCAGACACGGTCTTTACAAACTTTACTCTGGACAACGAGGTCCACTCTAGTTTCATCCACCGGCGCTTGAAGAGCCAGGAGCGCCGAGAGATGCAGCGGGAGATCCTGTCAATCCTCGGGTTACCGCACCGGCCGCGGCCGCACCTCCACGGCAAGCACAACGCCGCGCCGATGTTCATGCTGGATCTGTACAATGCCATGTCCACTGAGGGAGACGATGAGGGCTTCTCGTACCCGTACAAGCCCGTTTTCACCACTCAGGGACCGCCAATCGCGACTCTTCAGGACAACAACTTTCTGAACGACGCGGACATGGTCATGAGTTTTGTTAATCTAGTTGAACATGATAAGGAGTTTTTGCCCGTGAGGCGCCATCACAGAGAATTCCGATTTGACCTGTCCAAGATTCCTGAGGGTGAGGCGGTGACTGCTGCAGAGTTCCGGATCTACAAGGACTTTGTTCCAGAACGCTTTGACAATGAGACCTTCCGCATCAGCGTCTACCAGGTGCTGGAAGAACACTCAGACAGGGATTCAGATTTGTTCCTGCTGGACTCACGGGTGATCTGGGCAGCAGAAGAGGGCTGGTTGGTGTTCGACATCACAGCCACCAGTAACCACTGGGTGCTGAACCCGGGCCGGAATCTGGGCCTGCAGCTGGCTCTGGAAAGTTTGGATGGCCAGAGTGTGAATCCATGGGTGGCTGGGCTGGTGGGCCGCAGCGGCCCTCAGAGCAAACAGCCCTTCATGGTGGCCTTCTTCAAAGCTACGGAGGTCCACATCCGGAGCATCCGCTCTGCACAGGGCGGCAACAAGCAGCGCAATCCCAACCGCTCGAAAACCACCAAGGGCCAGGAGGCACTGCGTCAATCCTGTCTCTCTTTCTTTTCAGAGAACAGCAGTGCTGATCAGAAGCAGGCCTGTAAGAAACATGAGCTGTACGTTAGTTTTCGAGACCTTGGATGGCAGGATTGGATTATAGCTCCGGAGGGTTACGCTGCTTATTACTGTATGGGAGAATGTGCCTTTCCTCTCAATTCCTACATGAACGCCACAAACCACGCCATCGTACAGACATTGGTTCACTTCATCAACCCCGAAACGGTTCCAAAACCCTGTTGCGCCCCCACACAGCTCCATGCCATCTCCGTCCTGTATTTTGATGATAGCTCCAATGTCATCCTGAAGAAATACCGCAACATGGTGGTCAGAGCGTGTGGCTGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23621 lncRNA downstream 168615 298783 ~ 371501 (+) True G21017
TU23652 lncRNA downstream 189437 319605 ~ 380179 (+) False G21045
TU23653 lncRNA downstream 189437 319605 ~ 380179 (+) True G21045
TU23665 lncRNA downstream 211167 341335 ~ 342387 (+) True G21056
TU23697 lncRNA downstream 272094 402262 ~ 402574 (+) True CI01000002_00401987_00402742
CI01000002_00021260_00021739.mRNA mRNA upstream 44285 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00401987_00402742.mRNA mRNA downstream 270823 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00407685_00411542.mRNA mRNA downstream 277309 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00470438_00473433.mRNA mRNA downstream 340270 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00699406_00707935.mRNA mRNA downstream 568889 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 588054 718222 ~ 719501 (+) True CI01000002_00718489_00718872
TU23870 other downstream 333387 463555 ~ 463916 (+) True G21239
TU23885 other downstream 348979 479147 ~ 480455 (+) True G21254
TU23905 other downstream 392839 523007 ~ 525797 (+) True G21272
TU24708 other downstream 1257446 1387614 ~ 1409057 (+) True G21930

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043724 True 1524 mRNA 0.53 7 NC_007134.7 6421771 ~ 6522099 (-)
bowfin (Amia calva) AMCG00008176 True 960 mRNA 0.58 7 CM030123.1 44971340 ~ 44983745 (-)