RNA id: CI01000002_00401987_00402742.mRNA


Basic Information

Item Value
RNA id CI01000002_00401987_00402742.mRNA
length 1787
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000002_00401987_00402742
representative False

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 400991 ~ 402777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATAAAGGGGCAGAAAGCTACTGTATTTCACTACTAGATGGCGATGTCTACTCTTTTTTTGTTGTGGAGATGAATAAGTTTGCTCAAATGAGAAAGAGGATTATTAGGTGTTAAATAAAAGATTTTATATTATTATTATTATTATTAGTTGTAGTAGCAGTAGTAGTATTGATTCCAATGACTGTTTTAAAATTTTATATTATTATAGATTGTACTATTATAGATTATACTATTTTATATGCCATATAGACTATGCAAGACATGGCAGTTTTCTTACTAGTTTCTAGTGTATGAGTCTTTGTATTGATACTAGCAAAATATCTCTACATCTATACATGTAGCATGTGTGTGACACTGTCACATAAAAGACATTTTACTGCTTTATTTATTACTATGATTTATGTATAATAGAGTTTTAATTGGTTTACATGTTTTTTAGTCCATTTTATTCCTCTTAACATTTTAAGTGCGTATGTTTTTTCAGAAATGAATGATTGGCCTGTCATGTGACCAGTCACATGACAGGAAGCAGGAAGTACATCTGTATAAAGAGAGCAGCATGGCAAACAAACAAGGATTCAGTAACAGTCAACAACTTACCTGGATTGTGGAGTTTCCTTTTTGCGGACTTACCTCTCCAGTCACAACCTTACAAACCTTTGGATTATCACTACCGTGGACATTTGTATATACACTGGTGGACACTCACTGTTTTAGGGTATGGTACTTTGGACTGTATGCTTTTAACAGACTGAGTTTTCCTGGTTTTATTGTGTTGTTTTAAAGTTCCCTGTGAATATTGTAAATACACAATTCTTATTTAAACTTATCACTGTTTTATGTCTCATTCTTTTAACCACTAACAAACTCACACAGTAAAATCTGACCCCATTTTAAATCTTGTGACTCAACCGATTTGGCTGATCGTTACATATGGTGGCCCGTACAGGGAACGTTTAAGATTTTAAAAAATTGTGTTGATAAAGTGGTAAAAGATGACGACTCATTTTGGTAATGCTGCTCCTTTTAAAACACCTGCTAATTTTAATGATGAACGGATTTTACACCAGTGTGATTGTGAACCGCTTCGTGCTGAAGTACTTTCTCTTAAAAACCTTGTTTTAAAACTGGAGAAGGATTTTAAAGACTCTGTTGAAAGTCATTTTAACCGTGAAGTGTATTTTAGAGAGGCTGTGGATGTAAAATTCAATAAGATGGAGGAATATGTGAAAGAGGCTATGGCAGCATTAGAAAAAGAGGTTGTTGAGTGCGTTCGGAGGAGAGACAAACAGTGGGCAAAACAACTTAAGGAAAAGAAACTTCCGGAAGCCACTGTCCCAACTCCTGCAGAGACATCCAACCCTGTGCCTTCCATCTACACCTCTTCACCTCCCACTGACTGTTCCACCATCTCAACACCTTCACAGACGGACAGCACAACAGAGCAAGGAATTAGCTGCACCAAGACATCATCAGGGCCAGATGTCAGCTACATCTTCTCTGTTCTTCCCTTCTCCAGTGAGGAAGTCAACAGCACACAACAGGATGACGTCACACTCACCATCATCTCTTCCACACCCCAGACAAACAGGATCACAGTGATCAACCACCAGGGCTTGCTGTACCGACGGATCCAGCGCAAGGACGGCCAGTACCGACTGCAGCTTGTCGTTCCAAAGGCCTTGATCAAACAAACGCTACAGAGCCTCCACGAAAGGACAATGGAGAGGCATTTTCCTCAGCACATCTAACAGACATTGGTTTTACTGTGTCAAAACCTTTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23652 lncRNA upstream 20812 319605 ~ 380179 (+) False G21045
TU23653 lncRNA upstream 20812 319605 ~ 380179 (+) True G21045
TU23621 lncRNA upstream 29490 298783 ~ 371501 (+) True G21017
TU23665 lncRNA upstream 58604 341335 ~ 342387 (+) True G21056
TU23521 lncRNA upstream 289539 58650 ~ 58690 (+) True G20928
TU23713 lncRNA downstream 1731 404508 ~ 407349 (+) True G21101
TU23729 lncRNA downstream 36976 439753 ~ 440376 (+) True G21117
TU23869 lncRNA downstream 59291 462068 ~ 462324 (+) True G21238
TU23871 lncRNA downstream 61339 464116 ~ 464324 (+) True G21240
TU23874 lncRNA downstream 65455 468232 ~ 468435 (+) True G21243
CI01000002_00066136_00130168.mRNA mRNA upstream 270823 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 379140 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00407685_00411542.mRNA mRNA downstream 4700 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00470438_00473433.mRNA mRNA downstream 67661 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00699406_00707935.mRNA mRNA downstream 296280 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 315445 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 335350 738127 ~ 744755 (+) True CI01000002_00738127_00744469
TU23870 other downstream 60778 463555 ~ 463916 (+) True G21239
TU23885 other downstream 76370 479147 ~ 480455 (+) True G21254
TU23905 other downstream 120230 523007 ~ 525797 (+) True G21272
TU24708 other downstream 984837 1387614 ~ 1409057 (+) True G21930

Expression Profile