RNA id: CI01000002_00407685_00411542.mRNA


Basic Information

Item Value
RNA id CI01000002_00407685_00411542.mRNA
length 1293
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000002_00407685_00411542
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 407477 ~ 411922 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAATGACTTGGCCATGATTAATTATATTGTCTGTTACATATGAAGATCTCAAGTATGAAGGAGCACAACATTCAGTACAGAGAAATATATGTCTCTTCCATAGTTGTGAGATTGTCTGACTAACAGTTTGAAGCTGGGCTACAAGTTCTGCAGTCACAGGCCATTCTACTGTAACCACAATTCCACTGCATGGCTGGTCAGCGATGATGGTTGTTTTCTTTTCTTTTAAACTAGATAAATGTTTATGGCCAAATGATAAATATAAGTGCAATACATCAGGTCATGTGGAAAGACTGTGGAGATCTACAGCAGATGAGCATTGCAGTCCAGTGGAAAGACTGGACAACCGGTCTCGCCCCCTTTGTAGCCTGTTCCATGGCCATCTCATCCATGGAAGCACCTTCAACTGGACATTTGTGGGGAAATTCATGGCCATGGCATTCCCCACCATCAGCGCTTTCTGGTGGTCGTGTATGATCTCCATTTTAAATGGCCCGAGAGATGGAATTGCCATTGGACAGACTCAGACCACAACCTGGGCAGCAGCCAAAGCTGCCGTAAGTTCAAACCAGAGGCGAATGAAGGACAACTTTGACAGAAGATACAAGGCCAAACCTAGTAAGATAACAGTTCTAGACTGGGTTCGGGTCCAGAGACAAACAAAATGGCATCGTTTTGGTCTAAACCCCTCCAGGTGGATTGCAAGGGAGCCTAGTGGAGGACCAACACACAGCACGTCTTTTGCACCACCATCACCGAGGCCAGTTCCACCATGGACAGGCCGGGTGCTTCAAGGATCCTCTGTCAGGGTGGTCCCGCAACAATCTCCACCAGCTGTGGGGCCTCAACCTCTTCAGCCACTGCTTGATGAGAATCAGGAGGGCCAGGATGAGCTTCTCATTCAATGAGCTTCTCATTCAACTTGTCTCAGCACTGAAGAGTGACGGACAATGTGAGCTTCACTGACTTCACTCCTATTGGTTGTCACTCCCAAAAATTGCTCTTTATTTGCATAAAGTTGAACAGATCTCATTTTTGTCGGGTCTTTGGACATGCCCCATCCGGTCGCCAAGGGTCACTTGTGTCGCACTTGCGTATTATTACTGTAACTGCAAGATGTTGTAATCAAGTAAATTGTGAAGGCATTTGGATAGTATTATAATACAATTCTCATAATTTTGACTTCAGTACAAGAAAATTAGGGTATTTGGCTTTTCAAAACCAGTAGATTGGATGATCAAGTGAAAGTCTAACTTTGTGTTAGTTATTTGAATGCAAATAATCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23713 lncRNA upstream 128 404508 ~ 407349 (+) True G21101
TU23697 lncRNA upstream 4903 402262 ~ 402574 (+) True CI01000002_00401987_00402742
TU23652 lncRNA upstream 27298 319605 ~ 380179 (+) False G21045
TU23653 lncRNA upstream 27298 319605 ~ 380179 (+) True G21045
TU23621 lncRNA upstream 35976 298783 ~ 371501 (+) True G21017
TU23729 lncRNA downstream 27831 439753 ~ 440376 (+) True G21117
TU23869 lncRNA downstream 50146 462068 ~ 462324 (+) True G21238
TU23871 lncRNA downstream 52194 464116 ~ 464324 (+) True G21240
TU23874 lncRNA downstream 56310 468232 ~ 468435 (+) True G21243
TU23882 lncRNA downstream 64725 476647 ~ 476857 (+) True G21251
CI01000002_00401987_00402742.mRNA mRNA upstream 4700 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 277309 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 385626 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00470438_00473433.mRNA mRNA downstream 58516 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00699406_00707935.mRNA mRNA downstream 287135 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 306300 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 326205 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 360242 772164 ~ 786566 (+) True CI01000002_00772164_00786566
TU23870 other downstream 51633 463555 ~ 463916 (+) True G21239
TU23885 other downstream 67225 479147 ~ 480455 (+) True G21254
TU23905 other downstream 111085 523007 ~ 525797 (+) True G21272
TU24708 other downstream 975692 1387614 ~ 1409057 (+) True G21930

Expression Profile