RNA id: CI01000002_00470438_00473433.mRNA



Basic Information


Item Value
RNA id CI01000002_00470438_00473433.mRNA
length 2623
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01000002_00470438_00473433
representative True

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 470438 ~ 474568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGACATAAAATTGTTCTACGGAAGTAAAGAGCAGGATCCATGTGTTAGGCAAATCCCATCTGACAGTGAGGACAGTGAGATAGACGGCAGTGACAATGAGGAGGAGTGGAATGGAGAAAAAGGTTTGAGCAGAAGTGAAAAAATAAGTTCTGACAGCAGCTCTGCCGATGAAATTCTGACTCCGTACCAATATTTCAAAAGTCTTCTCTCCGATGACCTTTTTGAGCTTATTGTTAATGAGTCAAACCTGTACAGCATCCAGTGCGATCCTACCAAGCCGCTTAAACTTACTGTTCAAGAACTTGAACAGTTCTTTGGCACTGTGCTCCACATGTCTTTATTTGGTCTTCCAGCCACCCGCATGTTTTGGAGCCACAGTAGTCGCATTGCACATGTTGCTGATGTGATGCCTCTTGCAAGATGGGAGGCCATCAAAAGATTTCTCCATTTCAGTGACAACAGTTTTCAGCCCACAAGAGATATGGCTGACTACGATGAGTTATACAAGATTCGGCCTCTCCTAAATCACATCCTTACCAAGCTGAAACAACTTCCTATGCGTGAGATGTTGAGTGTGGATGAACAAATGGTGCCATTTAAAGGCAAGAGCAGAATCAAGCAGTACCTACCCAGTAAACCAAGAAAATGGGGTTACAGAATACTGGTCCTTGCTGGATCAGATGGTGTTCCACACAATTTTGAAGTTTATACTGGGAAAATTGTCCATCCACCTGAGCTTCCAGATATAGGCGCAAGTGGGAATGTAGTACTGCGCCTGGCAGAACCAATACCGAAGAATAGGAATTTCAAGCTGTCCTTTAACAACTGGTTTAGCTCAATCCCACTGATGCTCGAGCTGTCCCAGCAAGGTATCCACTGTCTGGGTACGGTGCGCTCTAATCGCTTGCCAGGAAGTTCCATGATGCCAGACGCTGATCTGAAAAGATCTGGCCGTGGGTCCTTCCAGGAAAAAACGGCCTATGTTGGAGATACCCAGCTGCATGCTGTCAAATGGTTTGACAACAGGCCAGTCACCCTCCTCAGTAGCTACGTAGGTGCTCACCCTGTATCCCATGTCGACAAATGGCACAGAGGCCAAAAGAAAACCATCAAGGTCCCATGCCCTGCAGCAGTATCCACATACAATCAGCACAAGGGAGGTGTCGACTTGTTGGATTCACTGATTGCTTTGTATCGCACCAACATCAGGTCAAAGAAATGGTACCACCGCCTTGTCTTTCATTTCATAGATATGGCAGTGGTGACATGTTGGCTCATCTACAGACGGAATTGTGCTGACAATGGAAAGATGAGAAGTGACCACATGCGCCTTTATGCCTTCAAGTCCCAAATTGCACACAGTCTGTGCAAATCCAACAAAGATACCAGGAAGAGAGGGCGAACCAGTGATTCGTGTGGTAGCCATGCGGATCAGTATCTGTACAGAAGTGAACTTGAGCTGGAAAATAAAGGGAAAAAAGTTTAATGGAGAACTAGAATGTGGCCTAACTCTGAGAGAGCTGGATGGGCTTCCAGTGGATTTTCTGAAAACTTTCTGGTCGGAGATAGGAGTTGACCTGCTAGAGGTGTTCAATGACAGCTTGCTGAAGGGTGGGTTGCCGTTGAGCTGCCGAAGAGCAGTGATTACTCTTCTTCTGAAAAGCAGTTTTCAGAGATCTCACTGAAATTAAGAACTGGAAGCCGGTATCACTTCTGTGCAGTGGTTATAAATTACTTTCTAAAACATTGACTAAAAGATTGACTAAAATAATGGGACATGTGATCCATCCAGATCAATCTTATTGTGTACCTAGCAGGTCAATCTTTGAGAATATTTTTTTAATTAGAGATATTATTACAGGTTTCTAAATTGTTTAATATCAATTGTGGTTTGTTGTCTCTAGACCAAGAGAAAGCTTTTGATCGTGTTGAACATGCTTATCTATGGAATGTTCTAGAAGTTTTTGGTTTTAATGAGAAGTTTTGGGTGTGGCGCGGCATGTAAATCTCACTGGCCAATTCCCATTGGCTCGTTTTGTACCACTTGGAGGTTGGGCTCCCAAGTGAGTCAGTATCGACGTTACGTCTCCATTCCCTCCTTCAGGGAACAGGGGTTACAATAGTAACCTAGACGTTTCAGTTTTGGATTCTAAGAATAACTCAGACTGTCCTTTTTGTTCTCAATGCTTTTATGTAATGTTTCAGGCTTAAACCTATGTTTGCAATGGTGCAAGGATTGTGTTTTAACAAATGTTTTTATCCTGAAACATTTATTTTTGTTTTTAAATATGTGCAACAAAAAGTGTGTTAAGTTTCAAAATTGATTTTTATTATTGGGCAAGCCAAACTGGCAATCTACATGAGTAGGAAAAGTAAAATAGAGCAAAGGGGCAATGATGATGTTATTGTTGTTTTTAAGTCTTTATTTAATACAAGAATTTTGATTGACTTTAGATTTTACAAAGCTATGAGTGATCTTTCTATTTTTGATTTGAAATGGTGTAGTTGTAATGTTTTGTGTACAATTGTTGATGATGAATTATTATTATTTTTTTAATTTTATGTTTTTTTAAATAAATTGTGGTGTGATTTTGTAAAATAATGTATTTTGGTTATTTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23874 lncRNA upstream 2003 468232 ~ 468435 (+) True G21243
TU23871 lncRNA upstream 6114 464116 ~ 464324 (+) True G21240
TU23869 lncRNA upstream 8114 462068 ~ 462324 (+) True G21238
TU23729 lncRNA upstream 30062 439753 ~ 440376 (+) True G21117
TU23713 lncRNA upstream 63089 404508 ~ 407349 (+) True G21101
TU23882 lncRNA downstream 2079 476647 ~ 476857 (+) True G21251
TU23898 lncRNA downstream 31728 506296 ~ 510897 (+) True G21265
TU23889 lncRNA downstream 36874 511442 ~ 516383 (+) True G21258
TU23902 lncRNA downstream 120469 595037 ~ 624319 (+) True G21269
TU24008 lncRNA downstream 202986 677554 ~ 677767 (+) True G21372
CI01000002_00407685_00411542.mRNA mRNA upstream 58516 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00401987_00402742.mRNA mRNA upstream 67661 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 340270 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 448587 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00699406_00707935.mRNA mRNA downstream 224489 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 243654 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 263559 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 297596 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_01017365_01040978.mRNA mRNA downstream 542621 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
TU23870 other upstream 6522 463555 ~ 463916 (+) True G21239
TU23885 other downstream 4579 479147 ~ 480455 (+) True G21254
TU23905 other downstream 48439 523007 ~ 525797 (+) True G21272
TU24708 other downstream 913046 1387614 ~ 1409057 (+) True G21930

Expression Profile