RNA id: CI01000002_01047128_01076568.mRNA



Basic Information


Item Value
RNA id CI01000002_01047128_01076568.mRNA
length 1888
RNA type mRNA
GC content 0.45
exon number 13
gene id CI01000002_01047128_01076568
representative True

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1046968 ~ 1076571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATAAAGAGCAAACAAAAGATATTAGACATCCAGTTTTCTCATGTGATTTGGAGACTATATGGATCTTGAAGTAGCAGTGCGCAATTGCGTGCATGTTTTGCGATCACTCCCACAGGGTAGGATGTGCACACTAACATTGCAGAGATTCCTCCTGCGCCATGGAAATCTGCCGGACCCCTGTCCTGTCATCAACCCCCATTCTCTCCTGCCACAAAGGGGGCATTGTGTTCAGTCCCAGACCCGGGCAGACTGTCCTCAAACCAATCATGTTTGGCAAAGGCTCAGATCTTTGGCCAAGTGTGGTGAGTAAAGCCTGCTCAAAGCTCTCATCCAGCAGCAGCCAGATCCGCTGGCAGGCAGTAGCATCAAAGACGATAAGAGTCCCTGTGCTAATGCCACTCTATGGAAGGAAGGATTACAAGGCAGAGAAAAGGAGAGCGCAGGGACGAGACAACGGAGAGCGGGAAGAAAAGCGGGAGATCACAGCGACACTTAGAGCCAACAAAGGCGACGGAAGGAAAATGAGGGAGAAAAAACGATATCGAGATTGTTTGAAGGACATGGGCACTTTAAATAGAGTCCTCATGGAGAACACTGGCGGAGGCTTAGGTGTCACACACATTGTCTCCTTTCAGGGAGCCGCAATATGGCAACAGTGCAACTGGCAAGCGGTTCAGACAGAGTCCAGAAGTTCTTTCTTACCAAATTACAAATCACTAAGAATCACACATTTAATAGCAGATGAGATGCTTAAACTGTCATCTCAGATTCCAAAGACTTTGTTTTGTGGTCCAAACCACGTCATCTTTTGTCTATATGCAAAAGGAGGCAGACGGAACAGAACAATGTCTGTTCTGCCTGTGTCCGTGTGGGAGAAGTGCACAAAAACATCCTCTCGGGGCCTAATTCTTCTAAAGCTCCGCAAAGCCAAGGCAGCTTTTCGCGAACTTATTCAAGAGGAAATTGAACAAAGTGATGCCGAAAAGACCAAAAAGTTACTAATCTCAGATGGATCGTTTGTCTTGTGTTTTTTCGCTCAGGAAAGTGTTTGTGAGTTAGTGAGTGTCCATACAAGGGAGACAAAAAACAGGAAACGTGCCAACAATGCTCAGATTGTTCCAGTAGTGCTGATAAATGGGCCGCTGTCATCAAGGGGCTGCTGTAGGCTAGCAGTCAACACCTTGATGGCAAAGCTCATTAAGTCAGTTCATGTGTGCGATATTGGGAGCAGTTCAAAACTCAAATATTCCCTCCAGTTTAACAGGTTTGTGTTGACTGCATTCCATGCCACCATGTCAGTGGAAAACAGTGGTGGTCAGGCTCAGATGTTCAAGGTCTTTGCAGTAAAACCACTTCAGCTGATTCCCGATTCATCTGTTACACTTCTGGAGTGGCTCAACCCTTGGGATCTCAGTATGAACAACATCAGTGAGATTCAGCCCAACGCTTTCCACAACCTGCACTTCCTCAGTGAACTCTCCATGATGCTAGAGTACTTCCTGCAGCTTCATATAAAAGATCAAATGTATTATATACCAACATCTAGCATGTACATACCCTGTCTAGTCCTTTATGTGTCAGGCATCAATCACAATAAGTTGAAGGCTAAAGCCAATATAGCATGTCTGCTCACACTTTTCCCCCTGAAGGACCAATTAGCTCAGAAGGTTGAGGATATCAGGGTGCAGATTTTGCCTGGTTCATATGACCCTTCGACTGCTCGTTTCACTTCTGTGGCATTCAATCAGTTCACTCCTATTTCACTTCAGTCTTTAGCGGAGATAATTGGTCAGCTGAAACCTACAAATTGCTGTATTGATATTATTCCATCAACAATGATAAAACAGACTTTCGGTATTACTGGTCTGAGTTTACTGATGTAGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24289 lncRNA upstream 46723 1000012 ~ 1000245 (+) True G21612
TU24287 lncRNA upstream 50726 996039 ~ 996242 (+) True G21610
TU24284 lncRNA upstream 55291 989439 ~ 991677 (+) True G21607
TU24272 lncRNA upstream 72805 961916 ~ 974163 (+) False G21605
TU24363 lncRNA downstream 52897 1129468 ~ 1130441 (+) True G21674
TU24388 lncRNA downstream 56342 1132913 ~ 1144177 (+) False G21697
TU24392 lncRNA downstream 56342 1132913 ~ 1137686 (+) True G21697
TU24398 lncRNA downstream 85889 1162460 ~ 1162881 (+) True G21702
TU24423 lncRNA downstream 123105 1199676 ~ 1199884 (+) True G21713
CI01000002_01017365_01040978.mRNA mRNA upstream 5281 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_00772164_00786566.mRNA mRNA upstream 260402 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_00738127_00744469.mRNA mRNA upstream 302213 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00718489_00718872.mRNA mRNA upstream 327467 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00699406_00707935.mRNA mRNA upstream 338663 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_01103311_01128430.mRNA mRNA downstream 26740 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01154239_01172018.mRNA mRNA downstream 76940 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01257892_01258637.mRNA mRNA downstream 181146 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01474926_01477596.mRNA mRNA downstream 398355 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 469877 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
TU23905 other upstream 521171 523007 ~ 525797 (+) True G21272
TU23885 other upstream 566513 479147 ~ 480455 (+) True G21254
TU23870 other upstream 583052 463555 ~ 463916 (+) True G21239
TU24708 other downstream 311043 1387614 ~ 1409057 (+) True G21930

Expression Profile