RNA id: TU23665


Basic Information

Item Value
RNA id TU23665
length 529
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G21056
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 341335 ~ 342387 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCATCTGTTTGTCTTGTAGTCACTGGTGTTCTCTTTAGATGTTTTCCTCTGCAGGTATAATTTCCTGAATGACTCGCTTTTGCTGAGATGATTGAGAGTGTCTCTCCAGAAAAGGAAATGTCCTCATCACCTGAAAGCTGAGCTCTATTTCTAAACCATTCATAGCCCCATTCATTTGAACCTCCATCAATTGAACACTTCAGAGTTACTTTTTCAGTTGGGTAAAATGTTTTCCATTCAGACTCTATTGACAGTTTTGGTTGAGGTGGGTATTTAACTTGCACTTGTAGAGTCTCACTGTCCACTGAGAAGTCTCCTCTTTTTGCTTTGCATTGATAGACACCAGTGTTAGAGAGAGACGCTGAGCTGATAGTGAAGGTTGGATCTGTGATCAACTTTTTTGAGTCTTTATACCAGTCGTACTCCCAACCATCACCAGGCATGTTACAACCAAGCTGGACTTCTTCCTCAGTGTAGAAGAACTCAAACCACTGATGTTTTGTGATGTTTGGTTTTGGTGTGTTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23521 lncRNA upstream 229883 58650 ~ 58690 (+) True G20928
TU23697 lncRNA downstream 59875 402262 ~ 402574 (+) True CI01000002_00401987_00402742
TU23713 lncRNA downstream 62121 404508 ~ 407349 (+) True G21101
TU23729 lncRNA downstream 97366 439753 ~ 440376 (+) True G21117
TU23869 lncRNA downstream 119681 462068 ~ 462324 (+) True G21238
TU23871 lncRNA downstream 121729 464116 ~ 464324 (+) True G21240
CI01000002_00066136_00130168.mRNA mRNA upstream 211167 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 319484 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00401987_00402742.mRNA mRNA downstream 58604 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00407685_00411542.mRNA mRNA downstream 65090 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00470438_00473433.mRNA mRNA downstream 128051 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00699406_00707935.mRNA mRNA downstream 356670 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 375835 718222 ~ 719501 (+) True CI01000002_00718489_00718872
TU23870 other downstream 121168 463555 ~ 463916 (+) True G21239
TU23885 other downstream 136760 479147 ~ 480455 (+) True G21254
TU23905 other downstream 180620 523007 ~ 525797 (+) True G21272
TU24708 other downstream 1045227 1387614 ~ 1409057 (+) True G21930

Expression Profile