RNA id: TU23729


Basic Information

Item Value
RNA id TU23729
length 624
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G21117
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 439753 ~ 440376 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTACTATAGACTACTATTATAATGGAAGTTAGTTGACATGTAGTTGCAAAGTTACTTTTAGTTAGTAGAATGTCTGAAGTGGACCATCAAAATAAAGTGTAATTAAAATATTATTACTGAATATATATTTTATATTATGATATCCACTCACCTTGTAGAGTTAAACTGTACCTATCACTTTTTTCAGACTCAGTATTTCTGTTTTTTGCCTTGCATTCATAATTTCCACCATCTGTCACAGTGATGCTGGAATGATAGTCAGTTTTGAAATTAGTGGTGTCCTTGTACCAGTCGTATTGTAACTCAGATGCTCCTCCAGGGACCTCACAGTGCAGAGTGACTGTCTCTGTGCTGTACAGCACCTTGTGAGTTGGATTGCCAGTTATCTTGGGCTTGGGAATCAGAATCGGAGGGTCTAGGGGATGAATAATCCTTAGGTTAAAGTGGCTAAATACTTTTTAATGCAGTGGTGTAACTTAAAAATAAAATTGTTAAATAAAATAGTCATTAAAAGTCCAGGTTGCACTTTATTTTACAGTATATGTACTTACAGTGTACTACTTACCTAAAAAAATACTGGGTAATATAAGGTAACTACAGGGGTTAAGGTTGGGTTAAGGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23713 lncRNA upstream 32404 404508 ~ 407349 (+) True G21101
TU23697 lncRNA upstream 37179 402262 ~ 402574 (+) True CI01000002_00401987_00402742
TU23652 lncRNA upstream 59574 319605 ~ 380179 (+) False G21045
TU23653 lncRNA upstream 59574 319605 ~ 380179 (+) True G21045
TU23621 lncRNA upstream 68252 298783 ~ 371501 (+) True G21017
TU23869 lncRNA downstream 21692 462068 ~ 462324 (+) True G21238
TU23871 lncRNA downstream 23740 464116 ~ 464324 (+) True G21240
TU23874 lncRNA downstream 27856 468232 ~ 468435 (+) True G21243
TU23882 lncRNA downstream 36271 476647 ~ 476857 (+) True G21251
TU23898 lncRNA downstream 65920 506296 ~ 510897 (+) True G21265
CI01000002_00407685_00411542.mRNA mRNA upstream 27831 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00401987_00402742.mRNA mRNA upstream 36976 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 309585 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 417902 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00470438_00473433.mRNA mRNA downstream 30062 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00699406_00707935.mRNA mRNA downstream 258681 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 277846 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 297751 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 331788 772164 ~ 786566 (+) True CI01000002_00772164_00786566
TU23870 other downstream 23179 463555 ~ 463916 (+) True G21239
TU23885 other downstream 38771 479147 ~ 480455 (+) True G21254
TU23905 other downstream 82631 523007 ~ 525797 (+) True G21272
TU24708 other downstream 947238 1387614 ~ 1409057 (+) True G21930

Expression Profile