RNA id: TCONS_00012987


Basic Information

Item Value
RNA id TCONS_00012987
length 798
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_006744
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33040436 ~ 33054856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATCATCACGAGGTCCAACACGGAAGCGTGAGCTGCAGTCCCGAGGATTTTGTTATTGCCCGAGAAGCTGATTTTTCCCTATTGTTTCGTACCACAACAGACTTCAAATTTTCGCTCTTTTATtctgttgtcatttattttgtttatttgctttagaCTTCGTTTGTTCCACTATGTCTTCAGAGGAGTTTGAAAAGCTGCATGAGATGTATAAATCTCTGTATGACGAAGTGAAGTTGATGCCAGAACGGGTGCAGAAGAGCCAGGGAGagGAAAGGAAGAGAATTGTCAGAGACTTTGATGAGCGTGTTTCAGAGGCTGAAGAAGTGACTCATCTTCAGTCACAGCGTGCTTTGCTAATCCAGGGGACAGAGTCTCTAAATAATGCGTCAAAAAGTATTGAGCGAAGCCAGCGGATTGCGGCAGAGACCGACCAGATTGGCACAGACATCATTGAGGAGCTCGGAGAGCAAAGAGAGCAGCTGGACCGCACCAGAGATAGATTGGTTAACACTGGAGAGAACCTGAGCCGGAGCAGGAAGATCCTGCGCGCAATGTCCAGACGGATCGTGACGAACAAACTGCTcctctccatcatcatcatcatggagGTGGCCATCTTAGGGGGTGTGGTGTACTTGAAGTTCTTTCGCAAGTAGGCAGTGAGATACACAAGACTCTCTCCCTTTTCTTCTTCCTGATTTTCATGAGTTTCTGACCTGGCAACAATGTGCTGGATGCTTTCGTGACTGTTAGTGTCACATGGACTTGTATGAGAGGTTATTTTTAGTGCTAAAC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0006896 Golgi to vacuole transport biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0012507 ER to Golgi transport vesicle membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1148 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; regulation of protein localization to plasma membrane; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B).

Ensembl:

ensembl_id ENSDART00000135955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 31620 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 44763 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 233618 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 418736 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 421133 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013003 lncRNA upstream 206275 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 206275 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013001 lncRNA upstream 206275 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013864 lncRNA upstream 206275 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013002 lncRNA upstream 209807 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00012985 mRNA downstream 18887 33017561 ~ 33022372 (-) True XLOC_006743
TCONS_00012983 mRNA downstream 31525 33004340 ~ 33009734 (-) False XLOC_006742
TCONS_00012981 mRNA downstream 33440 32997675 ~ 33007819 (-) False XLOC_006742
TCONS_00012982 mRNA downstream 33478 33000337 ~ 33007781 (-) False XLOC_006742
TCONS_00012980 mRNA downstream 40610 32997020 ~ 33000649 (-) False XLOC_006742
TCONS_00012988 mRNA upstream 11749 33066605 ~ 33114934 (-) False XLOC_006745
TCONS_00012989 mRNA upstream 12800 33067656 ~ 33114933 (-) True XLOC_006745
TCONS_00012990 mRNA upstream 68628 33123484 ~ 33134611 (-) True XLOC_006746
TCONS_00012991 mRNA upstream 86423 33141279 ~ 33153889 (-) True XLOC_006747
TCONS_00012992 mRNA upstream 100572 33155428 ~ 33170733 (-) False XLOC_006748
TCONS_00012961 other downstream 446039 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1346212 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1394253 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1461695 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1600319 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 556847 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 604852 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1583773 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1589294 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 2128138 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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