RNA id: TU23871


Basic Information

Item Value
RNA id TU23871
length 209
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G21240
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 464116 ~ 464324 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGGAACAGAATGGGGTGTTAGGTGGCATAAATATTCAAGAAGAAAGCTCTTTAGACAAAATAGTTATGAGTCTCCATTTAGTTATAAGGGAGAACGTCATACATTAACGAGCTGTTAGCACTGCATTCAGCTGAGTGCTGTCAGTGCTATGTTTACTTTCACAGCATGCATAGCTGGGGAATCCCCTTGCTGCCGGGAGGATGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23869 lncRNA upstream 1792 462068 ~ 462324 (+) True G21238
TU23729 lncRNA upstream 23740 439753 ~ 440376 (+) True G21117
TU23713 lncRNA upstream 56767 404508 ~ 407349 (+) True G21101
TU23697 lncRNA upstream 61542 402262 ~ 402574 (+) True CI01000002_00401987_00402742
TU23653 lncRNA upstream 83937 319605 ~ 380179 (+) True G21045
TU23874 lncRNA downstream 3908 468232 ~ 468435 (+) True G21243
TU23882 lncRNA downstream 12323 476647 ~ 476857 (+) True G21251
TU23898 lncRNA downstream 41972 506296 ~ 510897 (+) True G21265
TU23889 lncRNA downstream 47118 511442 ~ 516383 (+) True G21258
TU23902 lncRNA downstream 130713 595037 ~ 624319 (+) True G21269
CI01000002_00407685_00411542.mRNA mRNA upstream 52194 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00401987_00402742.mRNA mRNA upstream 61339 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 333948 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 442265 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00470438_00473433.mRNA mRNA downstream 6114 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00699406_00707935.mRNA mRNA downstream 234733 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 253898 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 273803 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 307840 772164 ~ 786566 (+) True CI01000002_00772164_00786566
TU23870 other upstream 200 463555 ~ 463916 (+) True G21239
TU23885 other downstream 14823 479147 ~ 480455 (+) True G21254
TU23905 other downstream 58683 523007 ~ 525797 (+) True G21272
TU24708 other downstream 923290 1387614 ~ 1409057 (+) True G21930

Expression Profile