RNA id: TU23874


Basic Information

Item Value
RNA id TU23874
length 204
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G21243
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 468232 ~ 468435 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTTCTGATATTTGTCACAGCCATTCTTTGGCATGCACTCCCCTCAGCATGGCGGCGTGGGTATTCGTTCCCCAAATGCGTTAAGACGCAGTGCGAGTTCCCTTTCAAAAGGGAACGTCTCAGGTTACACATGTAACCTTGGTTCCCTGAGAACAGGGAACGAGACACTGCGTCTCCCTGCCATGCCTCGGGGCCGCCTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23871 lncRNA upstream 3908 464116 ~ 464324 (+) True G21240
TU23869 lncRNA upstream 5908 462068 ~ 462324 (+) True G21238
TU23729 lncRNA upstream 27856 439753 ~ 440376 (+) True G21117
TU23713 lncRNA upstream 60883 404508 ~ 407349 (+) True G21101
TU23697 lncRNA upstream 65658 402262 ~ 402574 (+) True CI01000002_00401987_00402742
TU23882 lncRNA downstream 8212 476647 ~ 476857 (+) True G21251
TU23898 lncRNA downstream 37861 506296 ~ 510897 (+) True G21265
TU23889 lncRNA downstream 43007 511442 ~ 516383 (+) True G21258
TU23902 lncRNA downstream 126602 595037 ~ 624319 (+) True G21269
TU24008 lncRNA downstream 209119 677554 ~ 677767 (+) True G21372
CI01000002_00407685_00411542.mRNA mRNA upstream 56310 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00401987_00402742.mRNA mRNA upstream 65455 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 338064 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 446381 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00470438_00473433.mRNA mRNA downstream 2003 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00699406_00707935.mRNA mRNA downstream 230622 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 249787 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 269692 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 303729 772164 ~ 786566 (+) True CI01000002_00772164_00786566
TU23870 other upstream 4316 463555 ~ 463916 (+) True G21239
TU23885 other downstream 10712 479147 ~ 480455 (+) True G21254
TU23905 other downstream 54572 523007 ~ 525797 (+) True G21272
TU24708 other downstream 919179 1387614 ~ 1409057 (+) True G21930

Expression Profile