RNA id: TU23885



Basic Information


Item Value
RNA id TU23885
length 1309
RNA type TUCP
GC content 0.43
exon number 1
gene id G21254
representative True

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 479147 ~ 480455 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TACAGATTCAATCAGTGCATACGCCCTTCAATTTCGCACCCTAGCGGCCTTAAGTGGCTGGAATGAGACCCTCCTCATTGCTTTTCACCAAGGATTAAGTACTGAGATTCGTCAACTGATGATGATTTATGATGATGCCATGGGGCTTGAGAATTTCATCCAAAAAAACATCTGGGTGTCACCTGTCTGCATGCTCGCTGCATAAACCTGCTCTGCATCCTGCGTCTTTGGTAACACCTGTCGCCCTTTCAGCACCTGAGCCGATGCCGATCGACTCTAACCATCTCACTCTTGTGGGAGCGTCAGCGAAGAATTACCAACCATCTTTGTCTATATTATGGGGGAGAAGGACACATAATTACCAATTTTCCCGTTCGTCCACCACGCCAAGCGGTAGGGTTGGGAACCGAGAACCGGTTCTCATCTGGAACCGGTACTGTTTTTTTAAAAGAACCGGAACCGTGCAAGATTTCTAAGTTTCGGTTCTGAAAACGGTTCTGGTGTGATGGGTGGGCGAAGTGCGGGGAGCGTATGTTTCTATTAAAGGATCTCACATCATGAATATTATAGCAATGAATGCACTGAAAAGCTCTCGCGCTACTCATGTACGTCAGATTTCAATGCAGAGAGAGAGAGAGAGAGAGGGGTGCCCAACGCTGCATGATTAATCTTTAAAAGATCGCGTTCTCGATTTCATCACCCACATGATCTAATTCCTAAATGACAACGGTTCGCCCGTGTATATTAAACCTTTGACAAAAATAAAATCGTGACATTCAAATCTGCGTTCGCGCTGCCGTTGATCTAAAGAGAGTTGCCATGTGTAGATATAAACAGCTTCACAAACAATCTTTTCAAACGCACAGTATCATTATTTCTGTGTGATAAATAGGCCTATTCCAATTATAACAGAAGTATACAAAAGTTTATTATTCAGATAGAAACGCTGATGTTTATGTATAATAAATTACCTTCTGAAAGTAACTGGACTTCAAATAACGACTGTATCGATTGCATTGTTACGCCACTAGGTGGCAACACATTTACTGTTAAAAATGTGTCTATCACTGAATCATTCTTTCAGAAACAAGTCTTTATGTGTCACAGTCACGCCTTCCCAGACTCCATTTCCCAGAATCCTCCTTGCTCCACACCTGTTTGCACATCCCTCATCAGCTTCCCGCTTCTCCCTGGATTCCCGGCACCTGTTCCTCGTCATTAGCACTCCCTTTAAGTTGGACTCACTTCTTGCACTCCCTGTCCATTCTTAATGTTATATTGATGTTATCTTATGTTAATTATTGTGTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23882 lncRNA upstream 2290 476647 ~ 476857 (+) True G21251
TU23874 lncRNA upstream 10712 468232 ~ 468435 (+) True G21243
TU23871 lncRNA upstream 14823 464116 ~ 464324 (+) True G21240
TU23869 lncRNA upstream 16823 462068 ~ 462324 (+) True G21238
TU23729 lncRNA upstream 38771 439753 ~ 440376 (+) True G21117
TU23898 lncRNA downstream 25841 506296 ~ 510897 (+) True G21265
TU23889 lncRNA downstream 30987 511442 ~ 516383 (+) True G21258
TU23902 lncRNA downstream 114582 595037 ~ 624319 (+) True G21269
TU24008 lncRNA downstream 197099 677554 ~ 677767 (+) True G21372
TU24049 lncRNA downstream 306830 787285 ~ 788362 (+) True G21411
CI01000002_00470438_00473433.mRNA mRNA upstream 4579 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00407685_00411542.mRNA mRNA upstream 67225 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00401987_00402742.mRNA mRNA upstream 76370 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 348979 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 457296 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00699406_00707935.mRNA mRNA downstream 218602 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 237767 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 257672 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 291709 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_01017365_01040978.mRNA mRNA downstream 536734 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
TU23870 other upstream 15231 463555 ~ 463916 (+) True G21239
TU23905 other downstream 42552 523007 ~ 525797 (+) True G21272
TU24708 other downstream 907159 1387614 ~ 1409057 (+) True G21930

Expression Profile