RNA id: TU23898


Basic Information

Item Value
RNA id TU23898
length 828
lncRNA type antisense_over
GC content 0.55
exon number 5
gene id G21265
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 506296 ~ 510897 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAGATTCGGCAGTAAGCCACATGAGCCAGGGCTCAGAGAATACACTGAAAATGTATAACACTATGAAGTAATCAGTGTTTGAAGTAATCAGACCTTGTGAAGTAACCAGAGACGATTCGTCACTTTCATCTGTCCCCTATACATGCCAATGGTGCATAGACACTCACCCACAATCTCACGGACGGGGACGGGCTGAGGCAGGGTGACGGGCTCGCTGCGTCCTCCGGCATTCACGGCCACCACACGAATGTTAAGTAGGTCTCCGGTTGTCAGGCCATTGATGACAAACCGGTTGGACGTGGTGAGTTCGGTATTGGCAGCCACCCATTCAGAAGATCCTTCCTTGCAGTATTCCACAATGTATCCATCCAGTCCAGAGCCAATGCTCTCTGGGGATCTCCACTTAAGAGTAACTGAGGTATCATTGATATCATCCACGCTGAGGCTCTGAGGGGCACTCGTGGGCACTGCTGGAGGAGGTGGTGTTGGTGGTTTAGGTGGCTCTTCTACAGGTGCAGCTTCAGCAGGAGCAGCCTCAGCTGGAGCATTAGTAGGAGCAGCTTCATCAGCAGGGCCTTCAGGAGCAGGTGCCTCTGCAGCGGGGGCAGATTCCGCCACTGCCGCTTCAGCCGGAGCTTCTACGGGTGCAGCTTCAGCAGGAGGCACCTCAGCGGGGGCAGCCTCGGGCACAGGCGCCGGCTCTGCCGGCTTCTCCTCTTTGGCAGCAGCCTTCTTGGCTGACTTTTTGATAGGTGCTGGTTTGGCTGGCATGATGCTTGGGAGAAACTCAACAGGACTGCCGGTCTTTGGGATGGCAATGTATTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23882 lncRNA upstream 29439 476647 ~ 476857 (+) True G21251
TU23874 lncRNA upstream 37861 468232 ~ 468435 (+) True G21243
TU23871 lncRNA upstream 41972 464116 ~ 464324 (+) True G21240
TU23869 lncRNA upstream 43972 462068 ~ 462324 (+) True G21238
TU23729 lncRNA upstream 65920 439753 ~ 440376 (+) True G21117
TU23889 lncRNA downstream 545 511442 ~ 516383 (+) True G21258
TU23902 lncRNA downstream 84140 595037 ~ 624319 (+) True G21269
TU24008 lncRNA downstream 166657 677554 ~ 677767 (+) True G21372
TU24049 lncRNA downstream 276388 787285 ~ 788362 (+) True G21411
TU24053 lncRNA downstream 284380 795277 ~ 799950 (+) True G21415
CI01000002_00470438_00473433.mRNA mRNA upstream 31728 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00407685_00411542.mRNA mRNA upstream 94374 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00401987_00402742.mRNA mRNA upstream 103519 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 376128 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 484445 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00699406_00707935.mRNA mRNA downstream 188160 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 207325 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 227230 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 261267 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_01017365_01040978.mRNA mRNA downstream 506292 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
TU23885 other upstream 25841 479147 ~ 480455 (+) True G21254
TU23870 other upstream 42380 463555 ~ 463916 (+) True G21239
TU23905 other downstream 12110 523007 ~ 525797 (+) True G21272
TU24708 other downstream 876717 1387614 ~ 1409057 (+) True G21930

Expression Profile