RNA id: TU24008


Basic Information

Item Value
RNA id TU24008
length 214
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G21372
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 677554 ~ 677767 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGAAATCCTCTGATATTTCTCTTTAAAAATTCACGTTTTAGACTTCTAATGACTGGTGTTTTGTTTTACTCTGTCCTCTGCGAGGTAAGAGGTTATTCTTCCGCCGCAAATCGATGCGTATGGTCGTCTGTCGGAAGCTAGTTATTATAGTTAATAAAGTTTTAAATTTGGATATTTTTCTTACAGAATCCTACCCATATTTTTCTTACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23902 lncRNA upstream 53235 595037 ~ 624319 (+) True G21269
TU23889 lncRNA upstream 161171 511442 ~ 516383 (+) True G21258
TU23898 lncRNA upstream 166657 506296 ~ 510897 (+) True G21265
TU23882 lncRNA upstream 200697 476647 ~ 476857 (+) True G21251
TU23874 lncRNA upstream 209119 468232 ~ 468435 (+) True G21243
TU24049 lncRNA downstream 109518 787285 ~ 788362 (+) True G21411
TU24053 lncRNA downstream 117510 795277 ~ 799950 (+) True G21415
TU24206 lncRNA downstream 168679 846446 ~ 846658 (+) True G21552
TU24211 lncRNA downstream 172411 850178 ~ 863796 (+) True G21554
TU24219 lncRNA downstream 186930 864697 ~ 865115 (+) True G21561
CI01000002_00470438_00473433.mRNA mRNA upstream 202986 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_00407685_00411542.mRNA mRNA upstream 265632 407477 ~ 411922 (+) True CI01000002_00407685_00411542
CI01000002_00401987_00402742.mRNA mRNA upstream 274777 400991 ~ 402777 (+) False CI01000002_00401987_00402742
CI01000002_00066136_00130168.mRNA mRNA upstream 547386 66136 ~ 130168 (+) False CI01000002_00066136_00130168
CI01000002_00021260_00021739.mRNA mRNA upstream 655703 21260 ~ 21851 (+) True CI01000002_00021260_00021739
CI01000002_00699406_00707935.mRNA mRNA downstream 21290 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00718489_00718872.mRNA mRNA downstream 40455 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00738127_00744469.mRNA mRNA downstream 60360 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00772164_00786566.mRNA mRNA downstream 94397 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_01017365_01040978.mRNA mRNA downstream 339422 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
TU23905 other upstream 151757 523007 ~ 525797 (+) True G21272
TU23885 other upstream 197099 479147 ~ 480455 (+) True G21254
TU23870 other upstream 213638 463555 ~ 463916 (+) True G21239
TU24708 other downstream 709847 1387614 ~ 1409057 (+) True G21930

Expression Profile