RNA id: TCONS_00012989


Basic Information

Item Value
RNA id TCONS_00012989
length 7798
RNA type mRNA
GC content 0.53
exon number 41
gene id XLOC_006745
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33066605 ~ 33114934 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCTCTCTCATGGCCACAGAGAGACAGCTGATGGGAAGCGCTGTTCAAGGCGCTGCTCTCTAGTCTGACAAATAAAGCACAAACGCACATCATGTGAAGTACTTTATAACACACTGAGGTCAGACATCTTTGAGGATCATGCACCCGTTCGGCCGTGAAGAGGAGACCTCCAGGCGGGAGCTCTTCGGCTTCTTCCGCCGGTGTCTGCAGCGCGGTGAGTGGGAGCTCGCGGCCGCTTGCGTGTCTCAGCTCGGCGAGGCGCGTGCAGAAGATCCGCACAGTCCGCGAGACATCGTTAAGGCCATCGTTACACACCCGTACCCGCTTCGGTGGGAAACAGTGGGCAGCCCTCACAGACTGGCCTGGTATTGGCTTCAGGTCCTGGAGAGACCGACTGAAATAAAGGTGAGCGTGTCTGTGAAGAGAGAACTGGAATTCTTGTTGCTCTTAGAGGAGCTAGAAGACATCCCACAGTCTGTGCTTAAGGAGCTGCATGAAGCCTTCCTATACTCAGAGGAAGTGAAGGGAAAGGCTCCTGGTGATTCGGCTTCTCCACTGAGTGCTGCTCTTCTGTCCTGCCTTCGCTCTCTTTTAACCCGCCAGCAGCCGCGCCTCTGCCACTCTCTTATTAGCTTCCTTTCTAATGGAGATCCGTCCAGAGATCACACCTTACAGGACGCTTTCATCCAGCACCTCACAGAGCAAGTGAAAGTCCCGGCGAAGGACAGGAATAGGGAATGGGTAGAGCAGGTGTGCTCAGTGCTGGCTTTAGCACCGTGGGGGTCAGACAGGTCTGGTGCTCAGCTGGAGCCCTTGTGGGAAGGTTTGTGGGCGGCTAGAGAAGGGCTGATGACGGAGGAGCGGATTTTGGGATGTCTGCTGAGGCCGCAGAGTCAGGCTCTGTTAATGGCATACAGCTCCACAGCGCTCAGACTGCTCAAAGACAAGCTGCTGGCAGAAGCTCCACACACACAGGTGGACTTGCCTGATCTAGAAAGggtcatgcttggtttgtgctgtCATAAAGACAAGCGCTTGGCCTGGAAAGCCATTTACTTTGAGTGTTTGAGCAGCGGAAAGCACTTTCTGGAGCAGGTTTTGCTTACTGGTTTAGATCTCATAAAGAGGGAGGAGTTCTCTAAACTGGAAACACTATTGCATTCTGAGTTCCAGCCTTTGTCCCGGCTCTTGCTTCTGCTGGGCTGGATGCATTGTCAAAGCCTGGAGTCTGCCAAGACCCTTCTTACAGTCTTACATCATCGTCAGCCCCAGAGCAATGATTCAGCATTGAGCGATTTGGCTTGCACTCTGTCCTGTCAGCTTGGTGTGTTGGAATGGTGCACACAGAACAACCCAGGGATTTCCCATGATGCCTTGTTGAGTCACTTGCACATGCTGGACCATCACTCTGCCCTGTATGTGCTTCACTGCCTGACTCCACTCGCCAAGTTTGAGGAGCACAAAGTGTTAGAGCTGCTGCAGAGAACAGGAGATCCTTCACAAGTGGACTCCCCTAGCAGCTCAGTCCAGAGGAACATCACTCTCTTTCGAGGTTTTTGTGCCATGAAGTATGCCCTGTATGCCATCAGTGTAAACGCACGCACTCATGCACACACTGGCTCTCTGGACTGTGAGCCTCTGCATGAGCTGCAGACAGAGGCGGCTCAAGAGGACGAGACAGCTGAAGGATGCTCTAATCTGTTCCAGCACTACCTGTCAGAATGTCAGCTGTACCTGGAAGCTGTTCCAGCATTATTCCGTCTGGAGCTCCTAGAGAACATTTTCTCCCTCCTTTTCCTTTCCGACTCTGACTTCACCCAACAAACCAGCACTGCCACAGAAACCCAACCATACACTAACACTGAGACAAGTAAACCAAAGAGCACTAAAGAAGTAAATACAGCTGAGCACTTCTTAAAGGCAGAAAATGAAGGTGAAAGGATGGATGAACTGAACCAGATAAACCCTCAGCTGGGCCACCTGACATCTGGGTGCCGCGGTTTTCTGGTGGACTTGAATGTGATGGAGGGGATCCTGCGGCTGGTCAGAGAAGGTTTGGAGGGTGTGTGTGGAGTCGGGCAGGAGGATGGAAGGGCTCTTGGGGCTGATGTGGAGCTGGCAGAGAGTCTGGGATGTTCAGTTACTGCAGAGACATTCAGCGCCCGCTTACAGAGACTGTCCAAATACACGGCAGAGGCTCAGTGGAGACTGCAGATTGTTACCAGTAACCATGGCAATGGGAATGATGGCTTGTACCTTCCATCTCCACTGCCCAGTCCAGCGCTTCCTCTGAAACGGCAGGGCAGTGGCAGCAGTGGCACAAGCAGTCGGAGGAGGAGAAAACACCACCGGCATCGCTCTGAACGGCACGTCTCATCTGAGCGACAGAACGGAGAAGTCAGCACCAGCACCTCAGATGGTGGGGTGTGTGTCAGCGTTGTGTGTCGTGGGACTGAAACGTGCCCGTGTGGTGGATCTCACAGCTGGCTGGTTCCTGCAATGCTGTCTCCTCCTGAGTCTCTCCTCATCGCCTGTATTCGCAGAGGCAACTACATTGAGGCACAGCAGGTGATTGCGATGTATGGTTTGGAGAACTCTGAGTGTGCGGGGGAGCTGGTCTTTATGGACCGGTACAGGGAGGTTCTGATTGAGCTGGCTCAGGTGGAGCAAAAGATCGAGAGCCAGTCCCTTTCGACATCCTCTTCATCTTCAGAGGGTCTGggcacactgggtgccactccagCAGGCAGGACCAGAATGGGCAGCAGCAGCAGATTAACACTCAAGAGCATCGGAAGTGCTGCAGCTGCAGGTATGGCTTTCTATTCAATTTCTGATGTGGCTGATCGTTTAATGAGTACCCCGAGCAGGCCGATACCTTGTCTAGAGGACAGTTACTGGCTCTCCCAGTGCACTATAGACTCGCCTGACTTCGTGCGACCCCTTGTGGAAGAGTTGAGCCCTGCAGCGATGGCAGCCTTTGACCTGTCCTGCTGTCAGTGCCAGCTATGGAAAACATCCCGGCAGCTGCTGGAGACTGCAGAGAGAAGACTCAGCAGCTTTCTAGAAGCCAGAGGTGTACGAGTTGATCCAAAAGTTCCTCATGCCAACGGAATTAGAGGATTCCCTTCAGTACTGCAACAAATCAGCAAGATCCTTAATAAAACCTCCACCAACAAAGGCATGAGTAAAACAGACTGTAATGGAGAGGAGAATGCTGTCTGTAGCCCTTTTGGCTGCAGTGCACAGGAAGTGCTGCTGTCTTGTCATTCAACATTAACAGAGGAAAGCATCACCATCCAGCAAAACCTGAATCAGCGCCTTGAGGTCACGCTTCAAACCCTGTCCTCTGCCACCAACACCTCAGTAGACAGTCTGGTGGGAAGCAATCTCCTGACGGCACTGGCTGAACAGGCTGCTCTCAAGCAGTCTGAACTGGATTGTCACCCGGTGCGGACAGCAATGAAACAGCTCCTACAGTATCTGGACCAGCTCTGCCCGCTTGTGCCTGATGGTGCTCCTGACAGACCTGATTACATACGCAGCTTCTTCGATTACGTCAATGTATTGGCTTCAGTACTGGTGCGCAGTTTGGGGTCAGAGGATCAGTCCACTGTGGTGAAATTGGGAAATCCTCTTTTACTGTTGCTCCAGTCGCCAGCCCAGCTTCTCTCTCACCTACTGTTTGACAGACAGGTGTCACCTGATAGGGTTCTGTCTCTTCTGCAGCAGGAGCGTCTTCGTTTGAGTGTGCAGCAGGTCGTAGTTCAGCGCTGCTGTGAAACTCTCCCTCTCTGGGACTCCAGAGCTGTAAACTTTTCTCAGAGGGTCTCAGGACTCAACGGTGGAGCTTTCTGTCCAGCCAGCATTGCCTCAATTCTCCAGCAGTATGCTCAAGATTGTAGCCCTTCCCTTGACCTCTCTGACCCCACCACGACCTCTGATCCCAGCTCTGAGTCAGAGGTCTCAGTGGAGGACGTGTCTGCCGCGTCCACCAGCCTCTCCACCTCTCCGCCCTCGCCATCTTCATCCTCCCCTTCCTCTTCTTTTCTCCTCACTCCATCTGCGCTGTCTTTCCTGAAGTCTCGTTCTCCTCTGGTTGCCGCTCTGGCTTGCCTCAGTGCCAGTAGGGGTGGCGTGACCCGCGTGACCTCCTCCGGTTGGTCAGGTTTGCCTTCATATTTTCGTGGATCTGGACGTAAAGAGGCGGTTCTGGATGGAGAGCAGATCTCGAGGGAAGGGGAAGCCCTGCTTAAGAACTTTCCAATTCTGAGAATGTACTTGCGGACTATGGCCGAACCAGTCCTGGGGGTCTCATTGGAAGCAGATGAGGGTCTCGGGGTGGCCCTCTGTGGGAAGCCTGTGGTGGGGATGCTGTTTTCAGGTCTGCAGGGCAATGCGGCGCAGGCAATGGCTGCTGAGGCGTTTCAGCAAGCCCTGAACAACGGCGATCTGAACAGAGCTTTAGATCTGCTAGAGCTCTATGCACAACCGTGCAGCCAGGAGGGGGCACTGCGAGACAAACTGCTGGCTTTCACTGCACTGCAAGAATCCAGCAGTGCTGAGCAGTTGTTTCGTGTACGGGACTGGGAGCTGCGTGGACGTGTGGTTCTGCAGGGTTTGGACCGCTGGCCTTTACAACAGTGTTTAGATTTACTGCACTTCTGTCTCAGTGACCAGAACACCAAAGATCCACTCCGAGAGCAGCTTCAGCAGAGGAAACAGGAGCTGGACATGTATCAGCGGATGCTGAGATTGCAGCCTTCATTGCCATGGGAGACGTGGCAGGAGTTGAGGGAGGAGTCAAcaaaaaatcctgaatctgtCTTCAGTCAAATGCTGGAGGCCAGGGAATTTGAGTTGTGCGCCCAGTGGGTGCAGCTTTATTCAGTTTCTGATCAGTCTGGAATGCAGCTGCAGACCGAACACCTGCTGTACCTCCTAGAACACAATCACACAGAAGAGGCtttccagCTCCTGGAGGCTCTCTCTGACTCAATGGGTTTGGAGGTCAGCGAGCGAGCCCTGGATCGAAGACCTGGATTGGCTGCCTGTCATTTCCTCTCAGATTATCTTACCTTGCACTTCCAGAGTCAGATGACCCCAGCAAGGAGACGCCACATCCATGCCCTGCACCTTGGCTCTAAAGTTCTGCTGACTCTGCCAGAAGCGTCTCGCCAGGACTATTTTTCCCTGCTCTCTGATCCGCTTCTCATGCTGGAGCAGATGCTGATGAATCTAAAGGTTGACTGGGCGGCTGTTGCCATCACGACTCTGCGGAGCCTTCTGCTGGCACAGGACGCTGGTATCACCACCCAGCACATTGACACCCTACTGGCTGATTACGCCCGCAAGGCTCTTGACTTTCCTTATGCTCCCAGAGAGTGGTCACGTTCTGaCTCTGTCATTAGTCTGCAAGATGCATTTCTGCAGTGTCCAGCTCAGGAGAGTTGCCCATCTTCTCCAAGCCACACACCTCCTCCATCAACAGgaGGCACACCCATGCAAACACCCTCTAGTGAGAGACGTCCCAGTGGGAAAAAGATCCGGCCACTGGCCACCCCTTTCACCCCTCCAGAGAAAACCCCTGACCGCAAAGACTGGATCCCAGACCACAAACAGCACATCTGCATGGTCTGCCAGAGGGAGAGATTCACCATGTTTAACAGACGGCACCACTGCAGACGCTGTGGCAGACTGGTGTGCCATTCCTGCTCCAGCAAGAAGATGGCAGTAGCCGGCTTTGACGAGCCGGTCAGAGTTTGTGACCAATGCTACAACTTCTTTCACACAGACTCAGATGAGGAGCTTGAACAAGGGGAAGTAGCAGGCAGCCCTTCATCCATTGATGAGGTCTTGAATGGGGTGCTCAGTCTGCCGGAGGTGTCACGGAAGCAGTACCGCCTGAGTCCAAACCCAGCAGAGAACCAACAGCTGAAGAGCGAGTTCTACTACGAACAGGCACCCAGCGCATCTCTCTGTGTGGCTATTCTGACACTACACAGTGATCATGCGGCCTGTGGGCAGCAGCTAATTGACCACTGCCGCTCACTATCCCGAAAACTGACCAATCCTGAGGTGGATGCACGTCTGCTGACTGATGTGATGCGGCAGCTACTGTTCAGTGCCAAACTCATGTTTGTAAATGCAGGATGCACACAAGAACCAGCACTCTGTGACAGCTACATCAGTAAGGTGGATGTGTTAAAAATCCTGGTCACTGCCAACTACAAATACATTCCATCTCTGGATGATATTCAGGAAACGGCTGCAGTGACACGTCTGCGCAACCAGCTGCTGGAATTGGAATATTATCAGCTGGCTGTGGAGGTGTCAACCAAGAGTGCACTGGACCCGAATGGTGTTTGGCAGGCATGGGCAATGGCATCTTTAAAGGCTGGAAATCTGAGTGGTGCCAGGGAGAAGTTTGTTCGCTGTCTGAAAGCACCAGTAGATCGAAACCAGCTAAACCACGGGCCGAGACTTCTGCAAGAGATTATCCAGCACCTGGAGTCCACCGTCAAACTCACCCTGAGCCAGACGATGGATGAGGATATCCTGGCATCTCTGCGTGAGCTGGAAGAGGCTCTGTCTGATTCTGCTCCTCCAGAAGGCACGGAAAGTAAAGTTCAGCGCTGCAACTTTCATCAGGAGTGTCTGTTTTACCTGTTCACATACGGCACACATCTGAGCCTCATCAGCTTTTACCTGCGCCACGACTGCCTGAAAGATGCCCTCACCTACTTACAGAACAAGggcTGTTCGGATGATGTGTTTCTGGAGGGCATCTTTCAGCCCTGTCTTGAACGTGGACGTCTGGGTGCTTTACAAGGTCTGCTGGAAAATCTAGACCCCACACTGGAGACCTGGGGCCGATATCTGCTTTCAGCCTGTCAGCTACTGCAGCGCAGGGGACACTACCACTCTCTGTACCAACTCCAGCAGTTCATGATGGACCACATTCGTGCTGCGATGACGTGCATCCGCTTCTTTTCTCATGGTGCTCAGTCATACCTGCAGCTGGGAGAACAGCAGCGCTGGCTGATCCGGGCCAAAGAGCACCTGAGGACTTACCTACAGGAGCAACAGAGCCGCAGGAAATCTCACAGCTCCTCCTTCAGGAAGAAAATGAGCTCCACTGATGTCTCCAGACACATTCACACAATCGAGCTGCAGCTGGAGGTGACACGATTCTTACACCGCTGTGAAAGCTCTCCGTCTAAAACAGCAGTCGGCTCCACCTACACAGGAAACAGTGCTCCTCCCACTCTGTTTGGAAACAGCCCTATGAAGGTGGACGTGGCCTGTAAGGTGATGCTGGGAGGCAAGAACATCGAGGAAGGTTTTGGCATTGCATATCGAGTAATACAGGATTTCCAGCTGGAGGCTCTGGCGGTCTACATCCGGGTGGGTCAGCGGCTGGTCCGGCAGCGGCAGTATTCCTCTGTGCGGCAGCTGCACAAATGTGTTGGAGAGTCTGGGACGGCCTCCAAACACGACTGTGACGCCATTGTGCTCAGCTGTGTGTCTGTGGCTGATAAGAGCCCTGCTGATGCTAAAGAACTCGAGACTCTGATTCTAGAGTGTAAGAATCCAGAAAACAAgATAAAGGCGTATCTGCAGTGCTCTAAGCTGAGGGCTGCGTATCTTCAGGCGGTGAAACTAAAACTTGTAAAAGCAACTCCACTGATACAAGAAGTGATGCGAGCAGCCGAGAGCTCAGGTGACTCTGTCATGCATGACATCTGCCGCCAGTGGCTCTCAGAGCATCAAGAGCCATCATCAAAACAAAGATAA

Function

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0007409 axonogenesis biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005813 centrosome cellular_component
GO:0030496 midbody cellular_component
GO:0046872 metal ion binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-3286 Predicted to enable phosphatidylinositol-3-phosphate binding activity. Acts upstream of or within axonogenesis and oocyte development. Predicted to be active in centrosome and midbody. Is expressed in fertilized egg; nervous system; oocyte; and somatic cell. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 15. Orthologous to human ZFYVE26 (zinc finger FYVE-type containing 26).

Ensembl:

ensembl_id ENSDART00000140543

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 58017 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 71160 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 260015 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 445133 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 447530 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013003 lncRNA upstream 146198 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 146198 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013001 lncRNA upstream 146198 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013864 lncRNA upstream 146198 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013002 lncRNA upstream 149730 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00012987 mRNA downstream 12800 33041259 ~ 33054856 (-) True XLOC_006744
TCONS_00012986 mRNA downstream 12809 33040436 ~ 33054847 (-) False XLOC_006744
TCONS_00012985 mRNA downstream 45284 33017561 ~ 33022372 (-) True XLOC_006743
TCONS_00012983 mRNA downstream 57922 33004340 ~ 33009734 (-) False XLOC_006742
TCONS_00012982 mRNA downstream 59875 33000337 ~ 33007781 (-) False XLOC_006742
TCONS_00012990 mRNA upstream 8551 33123484 ~ 33134611 (-) True XLOC_006746
TCONS_00012991 mRNA upstream 26346 33141279 ~ 33153889 (-) True XLOC_006747
TCONS_00012992 mRNA upstream 40495 33155428 ~ 33170733 (-) False XLOC_006748
TCONS_00012993 mRNA upstream 55417 33170350 ~ 33207424 (-) False XLOC_006748
TCONS_00012994 mRNA upstream 59285 33174218 ~ 33194647 (-) False XLOC_006748
TCONS_00012961 other downstream 472436 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1372609 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1420650 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1488092 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1626716 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 496770 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 544775 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1523696 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1529217 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 2068061 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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