RNA id: TU24049


Basic Information

Item Value
RNA id TU24049
length 1018
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G21411
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 787285 ~ 788362 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCTATTAAAATACGTACAAATTGCAGTGAGATCGGGTTGTTAAATGAGAATTACACTTCAGTTTCTACTACAAAGAATCTTTCCAGTGTGTTCACGTGTTTACTCGTGGACGTCTGACCTCGATGGACTGAGTAGAGGAAATGAACCAGAGAAGATTTACACATGAAAGAATGCAGAGCCTCAGAGCCACACATACTTATATGGCAGAAGAGCTTTTAATGTAAATAAACATATGCATGTTTGTAATATGTAAAACATACGTAAGCATACACTTTATGGCACTGTGCATGTTTGCAAGGTATTTTGCAGGTTTTGAATCTGATTGAGAAAATAGATGGATTTGAGTGTTTACATGCTTGATTTTTTAGGTCTAAGCCATCCATTTCAATCTATTCTAAATTTCATTTGGATCGAGCTCAATCAGATCGATTGAGATGTTTACATGAAAAACTTTTCAGTACAGTTGAGCCATCAATCCAATTAGAAACTGATTATTTGTGTGCATGTAAACAGCTAGAGTGACGTAAACAGATTGAACAAATTCGCCACCAATCCAACAAAATGTAAAATAGTTGAGTCTCATTATTATGCAACAACTACTCCTGCATGAAGATTAATAAACTTGGCAGAAGGCTGGCGATTGTTGACCACTGAACTGGTTCTGACATTATTTTTTTTTTTTTAACCCTGCTATATGTCCTGGAGGACTTTCTTATTCAAATCAAACTCTGAGTCATCCACTCTGCCTCAGGCATGGAACACAGACACACAAGTCTTTGTGAATGCATGTCAGAGTGACAGTCCTGTCAGCTGGCAGAGCTGCTTCTGAGACAGAAAATGACTGTTGGAGCCAGAACTAAACTTGAGGGCATGGAGGCTTTGGGTTGCCTTTTGTTGCACAGCAAAGTCAGCATTTACCTGTGCATGTCTAGCACTAATCTCTCATCAACATTAGTCAGCAGAGATCTCAGCAGCTCTATCTGTTCTAATACAAAGGACGAGCTTCAGCAAGAACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24008 lncRNA upstream 109518 677554 ~ 677767 (+) True G21372
TU23902 lncRNA upstream 162966 595037 ~ 624319 (+) True G21269
TU23889 lncRNA upstream 270902 511442 ~ 516383 (+) True G21258
TU23898 lncRNA upstream 276388 506296 ~ 510897 (+) True G21265
TU23882 lncRNA upstream 310428 476647 ~ 476857 (+) True G21251
TU24053 lncRNA downstream 6915 795277 ~ 799950 (+) True G21415
TU24206 lncRNA downstream 58084 846446 ~ 846658 (+) True G21552
TU24211 lncRNA downstream 61816 850178 ~ 863796 (+) True G21554
TU24219 lncRNA downstream 76335 864697 ~ 865115 (+) True G21561
TU24236 lncRNA downstream 125990 914352 ~ 914569 (+) True G21578
CI01000002_00772164_00786566.mRNA mRNA upstream 719 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_00738127_00744469.mRNA mRNA upstream 42530 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00718489_00718872.mRNA mRNA upstream 67784 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00699406_00707935.mRNA mRNA upstream 78980 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00470438_00473433.mRNA mRNA upstream 312717 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_01017365_01040978.mRNA mRNA downstream 228827 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_01047128_01076568.mRNA mRNA downstream 258606 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01103311_01128430.mRNA mRNA downstream 314949 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01154239_01172018.mRNA mRNA downstream 365149 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01257892_01258637.mRNA mRNA downstream 469355 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
TU23905 other upstream 261488 523007 ~ 525797 (+) True G21272
TU23885 other upstream 306830 479147 ~ 480455 (+) True G21254
TU23870 other upstream 323369 463555 ~ 463916 (+) True G21239
TU24708 other downstream 599252 1387614 ~ 1409057 (+) True G21930

Expression Profile