Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU24053 |
| length | 4539 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 3 |
| gene id | G21415 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000002 |
| NCBI id | null |
| chromosome length | 1907571 |
| location | 795277 ~ 799950 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU24049 | lncRNA | upstream | 6915 | 787285 ~ 788362 (+) | True | G21411 |
| TU24008 | lncRNA | upstream | 117510 | 677554 ~ 677767 (+) | True | G21372 |
| TU23902 | lncRNA | upstream | 170958 | 595037 ~ 624319 (+) | True | G21269 |
| TU23889 | lncRNA | upstream | 278894 | 511442 ~ 516383 (+) | True | G21258 |
| TU23898 | lncRNA | upstream | 284380 | 506296 ~ 510897 (+) | True | G21265 |
| TU24206 | lncRNA | downstream | 46496 | 846446 ~ 846658 (+) | True | G21552 |
| TU24211 | lncRNA | downstream | 50228 | 850178 ~ 863796 (+) | True | G21554 |
| TU24219 | lncRNA | downstream | 64747 | 864697 ~ 865115 (+) | True | G21561 |
| TU24236 | lncRNA | downstream | 114402 | 914352 ~ 914569 (+) | True | G21578 |
| TU24251 | lncRNA | downstream | 137246 | 937196 ~ 937501 (+) | True | G21589 |
| CI01000002_00772164_00786566.mRNA | mRNA | upstream | 8711 | 772164 ~ 786566 (+) | True | CI01000002_00772164_00786566 |
| CI01000002_00738127_00744469.mRNA | mRNA | upstream | 50522 | 738127 ~ 744755 (+) | True | CI01000002_00738127_00744469 |
| CI01000002_00718489_00718872.mRNA | mRNA | upstream | 75776 | 718222 ~ 719501 (+) | True | CI01000002_00718489_00718872 |
| CI01000002_00699406_00707935.mRNA | mRNA | upstream | 86972 | 699057 ~ 708305 (+) | True | CI01000002_00699406_00707935 |
| CI01000002_00470438_00473433.mRNA | mRNA | upstream | 320709 | 470438 ~ 474568 (+) | True | CI01000002_00470438_00473433 |
| CI01000002_01017365_01040978.mRNA | mRNA | downstream | 217239 | 1017189 ~ 1041687 (+) | True | CI01000002_01017365_01040978 |
| CI01000002_01047128_01076568.mRNA | mRNA | downstream | 247018 | 1046968 ~ 1076571 (+) | True | CI01000002_01047128_01076568 |
| CI01000002_01103311_01128430.mRNA | mRNA | downstream | 303361 | 1103311 ~ 1128805 (+) | True | CI01000002_01103311_01128430 |
| CI01000002_01154239_01172018.mRNA | mRNA | downstream | 353561 | 1153511 ~ 1172865 (+) | True | CI01000002_01154239_01172018 |
| CI01000002_01257892_01258637.mRNA | mRNA | downstream | 457767 | 1257717 ~ 1258637 (+) | True | CI01000002_01257892_01258637 |
| TU23905 | other | upstream | 269480 | 523007 ~ 525797 (+) | True | G21272 |
| TU23885 | other | upstream | 314822 | 479147 ~ 480455 (+) | True | G21254 |
| TU23870 | other | upstream | 331361 | 463555 ~ 463916 (+) | True | G21239 |
| TU24708 | other | downstream | 587664 | 1387614 ~ 1409057 (+) | True | G21930 |
