RNA id: TU24263


Basic Information

Item Value
RNA id TU24263
length 290
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G21600
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 954904 ~ 955193 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAATTAACAGCAGTGTAATGCGAGTTACGTAATCAGGTTACTTTTTTCCAAGTAACCAAGTAACTAGTAAAGTAAAGCCTTAAATTTATAGTTTTTTTTTGTTTGTTTTTTTCAAGAAACTAGTAAAGCATTAAATTTACAGCAACATATCTGAGTTGAACATGATGTTTATTGTAGTTCTAAACTAAATGTGAGCATGCATTTATTTTCTGCAATCCAGAATGGCAGCGCAGCTGAAAGGTCTGTTTGAGTTGCGCCCTCTGCTGTACAGGAGTGAATTTGCATTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24255 lncRNA upstream 11218 943434 ~ 943686 (+) True G21593
TU24254 lncRNA upstream 12331 942286 ~ 942573 (+) True G21592
TU24253 lncRNA upstream 14288 938651 ~ 940616 (+) True G21591
TU24251 lncRNA upstream 17403 937196 ~ 937501 (+) True G21589
TU24236 lncRNA upstream 40335 914352 ~ 914569 (+) True G21578
TU24266 lncRNA downstream 3610 958803 ~ 959087 (+) True G21603
TU24276 lncRNA downstream 5422 960615 ~ 974163 (+) False G21605
TU24272 lncRNA downstream 6723 961916 ~ 974163 (+) False G21605
TU24269 lncRNA downstream 6783 961976 ~ 974163 (+) True G21605
TU24284 lncRNA downstream 34246 989439 ~ 991677 (+) True G21607
CI01000002_00772164_00786566.mRNA mRNA upstream 168338 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_00738127_00744469.mRNA mRNA upstream 210149 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00718489_00718872.mRNA mRNA upstream 235403 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00699406_00707935.mRNA mRNA upstream 246599 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00470438_00473433.mRNA mRNA upstream 480336 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_01017365_01040978.mRNA mRNA downstream 61996 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_01047128_01076568.mRNA mRNA downstream 91775 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01103311_01128430.mRNA mRNA downstream 148118 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01154239_01172018.mRNA mRNA downstream 198318 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01257892_01258637.mRNA mRNA downstream 302524 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
TU23905 other upstream 429107 523007 ~ 525797 (+) True G21272
TU23885 other upstream 474449 479147 ~ 480455 (+) True G21254
TU23870 other upstream 490988 463555 ~ 463916 (+) True G21239
TU24708 other downstream 432421 1387614 ~ 1409057 (+) True G21930

Expression Profile