RNA id: TU24266


Basic Information

Item Value
RNA id TU24266
length 285
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G21603
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 958803 ~ 959087 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATTTCAACATTTATTAGGCTTTAAAAAATAACTTTTAATTTAAGTGAACTTAAAACAATCTTCACATAAACCCATTATAATAAATGTCATTTATATACAGAAATTGAATAAAGTTATCAAACACTTTACAGTCTTCACTGCATAAATTATAAAATAAATATAGATTAATCCTCATTAAAACTACAGTTTTCTCTGTTACCTTTGTTCTTTGATGAACATTAATGACAGACATCACAGCAACTGGTTTATTAGGCTGCTGTCACTTTAAGAGCTGCCACTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24263 lncRNA upstream 3610 954904 ~ 955193 (+) True G21600
TU24255 lncRNA upstream 15117 943434 ~ 943686 (+) True G21593
TU24254 lncRNA upstream 16230 942286 ~ 942573 (+) True G21592
TU24253 lncRNA upstream 18187 938651 ~ 940616 (+) True G21591
TU24251 lncRNA upstream 21302 937196 ~ 937501 (+) True G21589
TU24276 lncRNA downstream 1528 960615 ~ 974163 (+) False G21605
TU24272 lncRNA downstream 2829 961916 ~ 974163 (+) False G21605
TU24269 lncRNA downstream 2889 961976 ~ 974163 (+) True G21605
TU24284 lncRNA downstream 30352 989439 ~ 991677 (+) True G21607
TU24287 lncRNA downstream 36952 996039 ~ 996242 (+) True G21610
CI01000002_00772164_00786566.mRNA mRNA upstream 172237 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_00738127_00744469.mRNA mRNA upstream 214048 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00718489_00718872.mRNA mRNA upstream 239302 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00699406_00707935.mRNA mRNA upstream 250498 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00470438_00473433.mRNA mRNA upstream 484235 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_01017365_01040978.mRNA mRNA downstream 58102 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_01047128_01076568.mRNA mRNA downstream 87881 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01103311_01128430.mRNA mRNA downstream 144224 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01154239_01172018.mRNA mRNA downstream 194424 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01257892_01258637.mRNA mRNA downstream 298630 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
TU23905 other upstream 433006 523007 ~ 525797 (+) True G21272
TU23885 other upstream 478348 479147 ~ 480455 (+) True G21254
TU23870 other upstream 494887 463555 ~ 463916 (+) True G21239
TU24708 other downstream 428527 1387614 ~ 1409057 (+) True G21930

Expression Profile