Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU24284 |
| length | 978 |
| lncRNA type | antisense_over |
| GC content | 0.44 |
| exon number | 3 |
| gene id | G21607 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000002 |
| NCBI id | null |
| chromosome length | 1907571 |
| location | 989439 ~ 991677 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU24276 | lncRNA | upstream | 15276 | 960615 ~ 974163 (+) | False | G21605 |
| TU24272 | lncRNA | upstream | 15276 | 961916 ~ 974163 (+) | False | G21605 |
| TU24269 | lncRNA | upstream | 15276 | 961976 ~ 974163 (+) | True | G21605 |
| TU24266 | lncRNA | upstream | 30352 | 958803 ~ 959087 (+) | True | G21603 |
| TU24263 | lncRNA | upstream | 34246 | 954904 ~ 955193 (+) | True | G21600 |
| TU24287 | lncRNA | downstream | 4362 | 996039 ~ 996242 (+) | True | G21610 |
| TU24289 | lncRNA | downstream | 8335 | 1000012 ~ 1000245 (+) | True | G21612 |
| TU24363 | lncRNA | downstream | 137791 | 1129468 ~ 1130441 (+) | True | G21674 |
| TU24388 | lncRNA | downstream | 141236 | 1132913 ~ 1144177 (+) | False | G21697 |
| TU24392 | lncRNA | downstream | 141236 | 1132913 ~ 1137686 (+) | True | G21697 |
| CI01000002_00772164_00786566.mRNA | mRNA | upstream | 202873 | 772164 ~ 786566 (+) | True | CI01000002_00772164_00786566 |
| CI01000002_00738127_00744469.mRNA | mRNA | upstream | 244684 | 738127 ~ 744755 (+) | True | CI01000002_00738127_00744469 |
| CI01000002_00718489_00718872.mRNA | mRNA | upstream | 269938 | 718222 ~ 719501 (+) | True | CI01000002_00718489_00718872 |
| CI01000002_00699406_00707935.mRNA | mRNA | upstream | 281134 | 699057 ~ 708305 (+) | True | CI01000002_00699406_00707935 |
| CI01000002_00470438_00473433.mRNA | mRNA | upstream | 514871 | 470438 ~ 474568 (+) | True | CI01000002_00470438_00473433 |
| CI01000002_01017365_01040978.mRNA | mRNA | downstream | 25512 | 1017189 ~ 1041687 (+) | True | CI01000002_01017365_01040978 |
| CI01000002_01047128_01076568.mRNA | mRNA | downstream | 55291 | 1046968 ~ 1076571 (+) | True | CI01000002_01047128_01076568 |
| CI01000002_01103311_01128430.mRNA | mRNA | downstream | 111634 | 1103311 ~ 1128805 (+) | True | CI01000002_01103311_01128430 |
| CI01000002_01154239_01172018.mRNA | mRNA | downstream | 161834 | 1153511 ~ 1172865 (+) | True | CI01000002_01154239_01172018 |
| CI01000002_01257892_01258637.mRNA | mRNA | downstream | 266040 | 1257717 ~ 1258637 (+) | True | CI01000002_01257892_01258637 |
| TU23905 | other | upstream | 463642 | 523007 ~ 525797 (+) | True | G21272 |
| TU23885 | other | upstream | 508984 | 479147 ~ 480455 (+) | True | G21254 |
| TU23870 | other | upstream | 525523 | 463555 ~ 463916 (+) | True | G21239 |
| TU24708 | other | downstream | 395937 | 1387614 ~ 1409057 (+) | True | G21930 |
