RNA id: TU24287


Basic Information

Item Value
RNA id TU24287
length 204
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G21610
representative True

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 996039 ~ 996242 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTACCATAGGAAATTTATGGTCTATAAAGCTTTTTAACAGTTATCGAGGTTGAGCCAAGAACCTAGGACTAGTTCACCAACGTTGGTTTTTCAAATAATCTCCATTATTTAATGAACGATTCAATGGACAGTGGCGGTCCTAGAGGCAAAGTTGCTCAGAACGAGGAGTTCTACCACGTGGTATGAATGTTGTGGGCATGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24284 lncRNA upstream 4362 989439 ~ 991677 (+) True G21607
TU24276 lncRNA upstream 21876 960615 ~ 974163 (+) False G21605
TU24272 lncRNA upstream 21876 961916 ~ 974163 (+) False G21605
TU24269 lncRNA upstream 21876 961976 ~ 974163 (+) True G21605
TU24266 lncRNA upstream 36952 958803 ~ 959087 (+) True G21603
TU24289 lncRNA downstream 3770 1000012 ~ 1000245 (+) True G21612
TU24363 lncRNA downstream 133226 1129468 ~ 1130441 (+) True G21674
TU24388 lncRNA downstream 136671 1132913 ~ 1144177 (+) False G21697
TU24392 lncRNA downstream 136671 1132913 ~ 1137686 (+) True G21697
TU24398 lncRNA downstream 166218 1162460 ~ 1162881 (+) True G21702
CI01000002_00772164_00786566.mRNA mRNA upstream 209473 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_00738127_00744469.mRNA mRNA upstream 251284 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_00718489_00718872.mRNA mRNA upstream 276538 718222 ~ 719501 (+) True CI01000002_00718489_00718872
CI01000002_00699406_00707935.mRNA mRNA upstream 287734 699057 ~ 708305 (+) True CI01000002_00699406_00707935
CI01000002_00470438_00473433.mRNA mRNA upstream 521471 470438 ~ 474568 (+) True CI01000002_00470438_00473433
CI01000002_01017365_01040978.mRNA mRNA downstream 20947 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_01047128_01076568.mRNA mRNA downstream 50726 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01103311_01128430.mRNA mRNA downstream 107069 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01154239_01172018.mRNA mRNA downstream 157269 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01257892_01258637.mRNA mRNA downstream 261475 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
TU23905 other upstream 470242 523007 ~ 525797 (+) True G21272
TU23885 other upstream 515584 479147 ~ 480455 (+) True G21254
TU23870 other upstream 532123 463555 ~ 463916 (+) True G21239
TU24708 other downstream 391372 1387614 ~ 1409057 (+) True G21930

Expression Profile