RNA id: TU24388



Basic Information


Item Value
RNA id TU24388
length 679
lncRNA type read_through
GC content 0.48
exon number 3
gene id G21697
representative False

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1132913 ~ 1144177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCCTGGCAGGCAGGACAGATATCTTATCATATCACACAGTAATTTTACTTCACAGCAGTGGCAAAAATAGCTTGAAACGTGACAAGTTTCTCTCTTTTGTTCTCCATTCGGACATCTGTGAACCCAGAGGACTGCAGCGCTTCCATGTAGACCTCAGGACGCCAGTTCTCCCCGCTAAACATGTTCTTCGAGGCTACTTTTTTAACACTCTCTAGTCTGAGAGCTGTAACCATAATTCCACTGGTTTCATCACTCTGTGAATCGCTCTCGCTCCCGCTTTCAGATCCGGCCAGAAGTAATAACAGTTGCAGTGAAACACCTTGTCAACAGTGTTTTCCTCTATTGGCATGGCCACCAAATCACTGCAATACAACACAGCCTTTCCTCTGGAGATCTGATCCTTCATGCGCTCACTGGCCATCTGATGCATGTATTGTGAGTAGTCCACACCGATCAGTTTCCCTCTCGGGCCCGTGAGGAACTGCGAGGCCGCCTGCAGACCAAGGCCCGGCCCATGACCCAGCTCCAGCACCGTGTCGTTGGGTTGTATGTTGCTCAGTTTCACAGCATTCTCCTCCAAAATCTGATTGTGCCATTTAAAGAACTTGCTTACCAACCATCCAGTTAAAGAATACATGGGGTGACCCAGCTGTTTGCCCACCTTTTTAGACAGCATTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24363 lncRNA upstream 2472 1129468 ~ 1130441 (+) True G21674
TU24289 lncRNA upstream 132668 1000012 ~ 1000245 (+) True G21612
TU24287 lncRNA upstream 136671 996039 ~ 996242 (+) True G21610
TU24284 lncRNA upstream 141236 989439 ~ 991677 (+) True G21607
TU24272 lncRNA upstream 158750 961916 ~ 974163 (+) False G21605
TU24398 lncRNA downstream 18283 1162460 ~ 1162881 (+) True G21702
TU24423 lncRNA downstream 55499 1199676 ~ 1199884 (+) True G21713
TU24424 lncRNA downstream 56640 1200817 ~ 1201074 (+) True G21714
TU24426 lncRNA downstream 60366 1204543 ~ 1204919 (+) True G21716
TU24437 lncRNA downstream 89773 1233950 ~ 1234229 (+) True G21727
CI01000002_01103311_01128430.mRNA mRNA upstream 4108 1103311 ~ 1128805 (+) True CI01000002_01103311_01128430
CI01000002_01047128_01076568.mRNA mRNA upstream 56342 1046968 ~ 1076571 (+) True CI01000002_01047128_01076568
CI01000002_01017365_01040978.mRNA mRNA upstream 91226 1017189 ~ 1041687 (+) True CI01000002_01017365_01040978
CI01000002_00772164_00786566.mRNA mRNA upstream 346347 772164 ~ 786566 (+) True CI01000002_00772164_00786566
CI01000002_00738127_00744469.mRNA mRNA upstream 388158 738127 ~ 744755 (+) True CI01000002_00738127_00744469
CI01000002_01154239_01172018.mRNA mRNA downstream 9334 1153511 ~ 1172865 (+) True CI01000002_01154239_01172018
CI01000002_01257892_01258637.mRNA mRNA downstream 113540 1257717 ~ 1258637 (+) True CI01000002_01257892_01258637
CI01000002_01474926_01477596.mRNA mRNA downstream 330749 1474926 ~ 1477913 (+) True CI01000002_01474926_01477596
CI01000002_01546448_01547246.mRNA mRNA downstream 402271 1546448 ~ 1547474 (+) True CI01000002_01546448_01547246
CI01000002_01650177_01674596.mRNA mRNA downstream 506000 1650177 ~ 1674657 (+) True CI01000002_01650177_01674596
TU23905 other upstream 607116 523007 ~ 525797 (+) True G21272
TU23885 other upstream 652458 479147 ~ 480455 (+) True G21254
TU23870 other upstream 668997 463555 ~ 463916 (+) True G21239
TU24708 other downstream 243437 1387614 ~ 1409057 (+) True G21930

Expression Profile