Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU24392 |
| length | 895 |
| lncRNA type | antisense_over |
| GC content | 0.33 |
| exon number | 3 |
| gene id | G21697 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000002 |
| NCBI id | null |
| chromosome length | 1907571 |
| location | 1132913 ~ 1144177 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU24363 | lncRNA | upstream | 2472 | 1129468 ~ 1130441 (+) | True | G21674 |
| TU24289 | lncRNA | upstream | 132668 | 1000012 ~ 1000245 (+) | True | G21612 |
| TU24287 | lncRNA | upstream | 136671 | 996039 ~ 996242 (+) | True | G21610 |
| TU24284 | lncRNA | upstream | 141236 | 989439 ~ 991677 (+) | True | G21607 |
| TU24269 | lncRNA | upstream | 158750 | 961976 ~ 974163 (+) | True | G21605 |
| TU24398 | lncRNA | downstream | 24774 | 1162460 ~ 1162881 (+) | True | G21702 |
| TU24423 | lncRNA | downstream | 61990 | 1199676 ~ 1199884 (+) | True | G21713 |
| TU24424 | lncRNA | downstream | 63131 | 1200817 ~ 1201074 (+) | True | G21714 |
| TU24426 | lncRNA | downstream | 66857 | 1204543 ~ 1204919 (+) | True | G21716 |
| TU24437 | lncRNA | downstream | 96264 | 1233950 ~ 1234229 (+) | True | G21727 |
| CI01000002_01103311_01128430.mRNA | mRNA | upstream | 4108 | 1103311 ~ 1128805 (+) | True | CI01000002_01103311_01128430 |
| CI01000002_01047128_01076568.mRNA | mRNA | upstream | 56342 | 1046968 ~ 1076571 (+) | True | CI01000002_01047128_01076568 |
| CI01000002_01017365_01040978.mRNA | mRNA | upstream | 91226 | 1017189 ~ 1041687 (+) | True | CI01000002_01017365_01040978 |
| CI01000002_00772164_00786566.mRNA | mRNA | upstream | 346347 | 772164 ~ 786566 (+) | True | CI01000002_00772164_00786566 |
| CI01000002_00738127_00744469.mRNA | mRNA | upstream | 388158 | 738127 ~ 744755 (+) | True | CI01000002_00738127_00744469 |
| CI01000002_01154239_01172018.mRNA | mRNA | downstream | 15825 | 1153511 ~ 1172865 (+) | True | CI01000002_01154239_01172018 |
| CI01000002_01257892_01258637.mRNA | mRNA | downstream | 120031 | 1257717 ~ 1258637 (+) | True | CI01000002_01257892_01258637 |
| CI01000002_01474926_01477596.mRNA | mRNA | downstream | 337240 | 1474926 ~ 1477913 (+) | True | CI01000002_01474926_01477596 |
| CI01000002_01546448_01547246.mRNA | mRNA | downstream | 408762 | 1546448 ~ 1547474 (+) | True | CI01000002_01546448_01547246 |
| CI01000002_01650177_01674596.mRNA | mRNA | downstream | 512491 | 1650177 ~ 1674657 (+) | True | CI01000002_01650177_01674596 |
| TU23905 | other | upstream | 607116 | 523007 ~ 525797 (+) | True | G21272 |
| TU23885 | other | upstream | 652458 | 479147 ~ 480455 (+) | True | G21254 |
| TU23870 | other | upstream | 668997 | 463555 ~ 463916 (+) | True | G21239 |
| TU24708 | other | downstream | 249928 | 1387614 ~ 1409057 (+) | True | G21930 |
